Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 RNY1P16-201ENST00000363063 111 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 Y_RNA.276-201ENST00000364732 109 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 CYCSP33-201ENST00000414485 327 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 RPL7P2-201ENST00000427639 268 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 PRDX3P3-201ENST00000447765 522 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 RPL31P60-201ENST00000478450 367 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-1023P-201ENST00000516137 106 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 RNA5SP49-201ENST00000516450 115 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 SNORA31.22-201ENST00000517204 135 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 MIR5692A1-201ENST00000580523 69 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 MIR3976-201ENST00000606807 139 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 MIR1244-1-201ENST00000612829 85 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 AL355810.1-201ENST00000614629 552 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 AL021997.2-201ENST00000615674 271 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 AL138825.1-201ENST00000618587 192 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 MIR1244-3-201ENST00000635744 85 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 MIR1244-2-201ENST00000636449 85 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 MIR1244-4-202ENST00000636813 85 ntBASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP3Q9Y3E7 PRO1804-201ENST00000623780 2050 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 SNORA20.1-201ENST00000364790 130 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-1062P-201ENST00000383908 107 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 Y_RNA.562-201ENST00000384695 113 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RPS26P8-201ENST00000393490 348 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-325P-201ENST00000411132 105 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 UBE2D3P2-201ENST00000424409 445 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RPS27AP12-201ENST00000429552 465 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RPS3AP46-201ENST00000448352 682 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 MTND4LP30-201ENST00000454092 297 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 HMGN2P13-201ENST00000476476 274 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 AC008958.1-201ENST00000511047 682 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RNA5SP519-201ENST00000516480 119 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 RNU6-570P-201ENST00000517051 105 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 IGKV2D-23-201ENST00000518179 286 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 LRRC37A5P-203ENST00000580181 585 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 AC067852.4-201ENST00000590314 478 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 AC123912.5-201ENST00000605470 343 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 SNORD91B-202ENST00000608459 222 ntBASIC5.4□□□□□ -1.54
CHMP3Q9Y3E7 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CHMP3Q9Y3E7 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.19-201ENST00000362462 99 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-596P-201ENST00000365395 98 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 SNORA51.11-201ENST00000384442 131 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.534-201ENST00000384599 112 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.551-201ENST00000384661 102 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 MIR195-201ENST00000385194 87 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 MIR1250-201ENST00000408098 113 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 MIR1193-201ENST00000408109 78 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 RPL7AP73-201ENST00000413490 353 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AL138785.1-201ENST00000425821 331 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 SUMO2P6-201ENST00000505273 288 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 FTH1P9-201ENST00000513251 355 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.687-201ENST00000516558 91 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AP003730.1-201ENST00000524605 285 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 HNRNPCP4-201ENST00000571636 900 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AL158827.2-201ENST00000602494 330 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 ZYXP1-201ENST00000617638 118 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AL691447.3-201ENST00000635020 330 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 SAGE2P-201ENST00000420011 2126 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 OR51H2P-202ENST00000641424 3046 ntBASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms