Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC079781.2-201ENST00000446424 169 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC117440.1-201ENST00000474107 571 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 RPL39P36-201ENST00000490784 156 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 ARL4AP2-201ENST00000507378 601 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC174048.1-201ENST00000603389 144 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC091805.2-201ENST00000603848 235 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC004805.2-201ENST00000605382 482 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC104073.3-201ENST00000610942 955 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC084035.1-201ENST00000634543 607 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC010680.1-201ENST00000590024 3590 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 API5P2-201ENST00000397055 1498 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 AC110774.1-201ENST00000623567 2018 ntBASIC3.26□□□□□ -1.89
LIMA1Q9UHB6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 MTCO1P12-201ENST00000414273 1543 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 RNU6-181P-201ENST00000363225 107 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 RNU6-108P-201ENST00000365558 107 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 RNU6-1042P-201ENST00000384204 107 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 MIR449B-201ENST00000384995 97 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC092809.3-201ENST00000415453 231 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL353678.1-201ENST00000422735 741 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 DPPA2P1-201ENST00000428060 556 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL592045.1-201ENST00000429867 352 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 RPS20P5-201ENST00000434808 360 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC093899.1-201ENST00000457984 376 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 RPS29P2-201ENST00000479278 136 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 RNU6-445P-201ENST00000516949 107 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 MIR5680-201ENST00000577577 84 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 NDUFA8P1-201ENST00000605525 367 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL139286.2-201ENST00000606838 396 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC022893.3-201ENST00000607665 437 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL020991.1-201ENST00000612314 373 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC130324.3-201ENST00000614165 542 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 MIR7112-201ENST00000616126 65 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 MIR7975-201ENST00000619350 68 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AC136475.10-201ENST00000620253 385 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 AL359693.1-201ENST00000614959 2407 ntBASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIMA1Q9UHB6 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RNU1-35P-201ENST00000362782 153 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RNU6-1097P-201ENST00000363586 107 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 Y_RNA.367-201ENST00000365544 101 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RNU5A-6P-201ENST00000384136 116 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 Y_RNA.505-201ENST00000384489 102 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AL590004.2-201ENST00000404787 371 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RN7SKP220-201ENST00000410611 288 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RNU2-66P-201ENST00000410650 161 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC114491.1-201ENST00000416095 246 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 HSPE1P1-201ENST00000421494 318 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RPL21P40-201ENST00000428586 483 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 MTCO2P11-201ENST00000431069 680 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 MTATP6P16-201ENST00000434543 526 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 FABP5P13-201ENST00000452144 328 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC091179.1-201ENST00000461606 579 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RPS3AP17-201ENST00000472594 777 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC108078.2-201ENST00000510750 236 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 RNA5SP165-201ENST00000517142 115 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AP003033.1-201ENST00000527244 415 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AP003392.2-201ENST00000527269 208 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AP001646.1-201ENST00000527936 915 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC024619.4-201ENST00000580924 316 ntBASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.24□□□□□ -1.89
LIMA1Q9UHB6 MIR4506-201ENST00000584693 77 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms