Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNY4P36-201ENST00000391116 96 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-370P-201ENST00000411008 104 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1304P-201ENST00000411374 106 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 Z85995.1-201ENST00000415547 335 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AL139396.1-201ENST00000421137 167 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 SKA2P1-201ENST00000425592 390 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RPL32P28-201ENST00000443577 397 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AL360271.2-201ENST00000447710 161 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AL500522.2-201ENST00000448562 343 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RPL37P6-201ENST00000460682 294 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AC084198.1-201ENST00000477747 402 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AC008526.1-201ENST00000509149 338 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RPL39P5-202ENST00000512505 151 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AL442663.2-201ENST00000554385 511 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 MIR3921-201ENST00000577308 85 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AL355365.1-201ENST00000616480 294 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AL512643.1-201ENST00000635735 524 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.15□□□□□ -1.74
PCIF1Q9H4Z3 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PCIF1Q9H4Z3 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PCIF1Q9H4Z3 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1167P-201ENST00000363227 94 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.132-201ENST00000363421 102 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.326-201ENST00000365176 113 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 SNORA4.3-201ENST00000365564 137 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-43P-201ENST00000384302 107 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 RPL21P90-201ENST00000415692 466 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 MTCO2P27-201ENST00000420740 428 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL139247.1-201ENST00000422768 325 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 RPL27AP8-201ENST00000424277 446 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL356535.1-201ENST00000440335 398 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 RPS24P13-201ENST00000442520 397 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL451050.1-201ENST00000450126 415 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AP000873.1-201ENST00000463987 400 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC104472.2-201ENST00000469035 601 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 RN7SL132P-201ENST00000478131 296 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 APOOP3-201ENST00000536787 586 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 CYCSP30-201ENST00000546447 172 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC004024.1-201ENST00000549244 247 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 IMMP1LP2-201ENST00000552954 492 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL121821.2-201ENST00000556081 394 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC106785.1-201ENST00000565935 262 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC005034.5-201ENST00000604219 466 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AL161798.1-201ENST00000604630 131 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 BRDTP1-201ENST00000605735 677 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC002044.1-201ENST00000606707 158 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 AC090132.2-201ENST00000615881 347 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
PCIF1Q9H4Z3 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC063979.1-201ENST00000415539 377 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC073063.1-201ENST00000434352 607 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 FABP5P14-201ENST00000437273 393 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 RPS27P27-201ENST00000498779 255 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC146944.2-203ENST00000502493 354 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AL359273.1-201ENST00000510918 627 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC139495.1-202ENST00000513164 354 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 SNORA31.8-201ENST00000516327 108 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-323P-201ENST00000521915 107 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AL163153.1-201ENST00000554223 283 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC007151.1-201ENST00000572774 483 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC087499.8-201ENST00000578406 226 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AL137849.1-201ENST00000604767 169 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 SNORA62.6-201ENST00000606322 83 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 AC107294.1-201ENST00000609524 467 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms