Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC109446.2-201ENST00000567872 497 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 MIR5092-201ENST00000583139 88 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AL136313.1-201ENST00000624804 202 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 AL137790.1-201ENST00000634283 177 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 MIR7157-201ENST00000635801 60 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS39Q96JC1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS39Q96JC1 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS39Q96JC1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS39Q96JC1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS39Q96JC1 RNU6-500P-201ENST00000362349 107 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 RNU6-778P-201ENST00000363269 103 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 Y_RNA.560-201ENST00000384689 102 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MIR19A-201ENST00000384878 82 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL356057.3-201ENST00000402607 340 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MTCYBP36-201ENST00000404146 440 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 RPL21P24-201ENST00000413752 448 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC244035.1-201ENST00000430042 390 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC010153.1-201ENST00000432862 727 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL831737.1-201ENST00000441288 271 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL139109.1-201ENST00000455491 297 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC010631.1-201ENST00000474150 156 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 TRBV1-201ENST00000476502 284 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AF131216.2-201ENST00000512316 564 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MRPS33P3-201ENST00000513456 322 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC116347.2-201ENST00000514912 523 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 DUXAP5-201ENST00000529668 529 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC093012.1-202ENST00000549403 582 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC024619.4-201ENST00000580924 316 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MIR3670-2-201ENST00000582974 65 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MIR3670-1-201ENST00000584160 65 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MIR3670-3-201ENST00000584855 65 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL391813.1-201ENST00000603098 260 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MTCYBP22-201ENST00000603788 447 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC004908.2-201ENST00000609090 574 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AL360219.1-201ENST00000610230 366 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 MIR3670-4-201ENST00000612260 65 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC005332.10-201ENST00000612725 619 ntBASIC2.61□□□□□ -1.99
VPS39Q96JC1 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS39Q96JC1 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS39Q96JC1 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
VPS39Q96JC1 RNU6-1167P-201ENST00000363227 94 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 Y_RNA.169-201ENST00000363745 96 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 RNU6-809P-201ENST00000384461 107 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 Z92545.1-201ENST00000411782 234 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS39Q96JC1 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 MTND5P25-201ENST00000430499 799 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC107083.1-201ENST00000439643 279 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC011816.1-201ENST00000441346 546 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 ELOCP30-201ENST00000447108 299 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AP000705.1-201ENST00000454567 350 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL121769.1-201ENST00000469473 401 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 RPS3AP22-201ENST00000488297 769 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 HMGB3P3-201ENST00000510526 400 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 TBCAP3-201ENST00000512475 312 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 RNU6-678P-201ENST00000516832 109 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 MTATP6P15-201ENST00000527233 835 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC007115.1-201ENST00000546853 234 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL133153.1-201ENST00000557756 303 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS39Q96JC1 MIR3199-1-201ENST00000582434 88 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AP001004.1-201ENST00000582468 324 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC060766.3-201ENST00000591442 263 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AL049779.4-201ENST00000604500 156 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC108747.1-201ENST00000609508 535 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC010297.1-201ENST00000623948 149 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC079416.3-201ENST00000624479 549 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 AC097655.1-201ENST00000635075 318 ntBASIC2.6□□□□□ -1.99
VPS39Q96JC1 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 352 ms