Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AL031666.3-201ENST00000609320 1006 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.05□□□□□ -1.76
CHFRQ96EP1 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 ZNF734P-201ENST00000419494 1534 ntBASIC4.05□□□□□ -1.76
CHFRQ96EP1 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHFRQ96EP1 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 RNU6-266P-201ENST00000364225 107 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 SNORA7.2-201ENST00000364446 145 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 RNU6-601P-201ENST00000384540 107 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 MIR513A2-201ENST00000385249 127 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 MIR454-201ENST00000390180 115 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 HSPE1P26-201ENST00000405341 275 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC068533.1-201ENST00000418542 415 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 HMGB1P9-201ENST00000429856 646 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 MTCO3P45-201ENST00000443036 613 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 SNRPGP3-201ENST00000469405 227 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 RPL7P49-201ENST00000471402 708 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC079140.5-201ENST00000507882 310 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 RNU6-202P-201ENST00000515998 96 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 Y_RNA.661-201ENST00000516003 99 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 ZNF192P1-203ENST00000565888 810 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 MIR4504-201ENST00000577413 92 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 MIR3146-201ENST00000580367 79 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC105224.1-201ENST00000587055 421 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.04□□□□□ -1.76
CHFRQ96EP1 Z82243.1-201ENST00000609432 473 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AC133104.2-201ENST00000615272 193 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 MIR7702-201ENST00000621931 59 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 PLCE1P1-201ENST00000622094 305 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 AL034408.1-202ENST00000636088 415 ntBASIC4.04□□□□□ -1.76
CHFRQ96EP1 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CHFRQ96EP1 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 RNU6-472P-201ENST00000384299 107 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AL356968.1-201ENST00000416622 474 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 AL139247.1-201ENST00000422768 325 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 OR2AS1P-201ENST00000427827 319 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 ELOCP18-201ENST00000434209 337 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 MTATP6P16-201ENST00000434543 526 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 HMGB1P15-201ENST00000453854 435 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 RNY3P15-201ENST00000516297 97 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 RNU6-256P-201ENST00000516747 97 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC090136.1-201ENST00000520009 240 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC023157.2-201ENST00000540596 141 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AL137100.2-201ENST00000555786 315 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 MIR5583-1-201ENST00000580941 59 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 MIR4775-201ENST00000581168 75 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 AL161756.2-201ENST00000604597 246 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 HMGN2P28-201ENST00000606102 262 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.03□□□□□ -1.76
CHFRQ96EP1 AC092608.2-201ENST00000624427 218 ntBASIC4.03□□□□□ -1.76
CHFRQ96EP1 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CHFRQ96EP1 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.77
CHFRQ96EP1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.77
CHFRQ96EP1 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CHFRQ96EP1 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.02□□□□□ -1.77
CHFRQ96EP1 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CHFRQ96EP1 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 KPNA2P1-201ENST00000458289 1591 ntBASIC4.02□□□□□ -1.77
CHFRQ96EP1 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHFRQ96EP1 RNU6-874P-201ENST00000362390 105 ntBASIC4.02□□□□□ -1.77
CHFRQ96EP1 RNU6-600P-201ENST00000362524 99 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms