Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 MIR7-2-201ENST00000384970 110 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 AL365496.1-201ENST00000426885 215 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN9AQ15858 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.68□□□□□ -2.14
SCN9AQ15858 AC006499.2-201ENST00000513470 337 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 RNU6-1256P-201ENST00000516539 103 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN9AQ15858 AC124947.2-202ENST00000552735 133 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 HMGB1P14-201ENST00000557424 591 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 MIR3912-201ENST00000577566 105 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.68□□□□□ -2.14
SCN9AQ15858 AC090897.2-201ENST00000581715 130 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 AP005229.2-201ENST00000609980 697 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 AC243773.3-201ENST00000613270 256 ntBASIC1.68□□□□□ -2.14
SCN9AQ15858 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SCN9AQ15858 RNU6-217P-201ENST00000384164 104 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 MIR1290-201ENST00000408735 78 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC099548.1-201ENST00000421443 426 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 PNPLA4P1-201ENST00000458328 305 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC026410.2-201ENST00000460281 156 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AL135752.1-201ENST00000479477 471 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 ATP5EP1-201ENST00000510257 156 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC1.67□□□□□ -2.14
SCN9AQ15858 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC1.67□□□□□ -2.14
SCN9AQ15858 HSPE1P3-201ENST00000559254 309 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 RPS15AP11-201ENST00000594193 385 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC004067.1-201ENST00000608733 700 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AL592148.2-201ENST00000612210 372 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SCN9AQ15858 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
SCN9AQ15858 OR4G1P-203ENST00000641984 1631 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.67□□□□□ -2.14
SCN9AQ15858 Y_RNA.122-201ENST00000363331 96 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 SUGT1P1-201ENST00000379514 476 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 U6.112-201ENST00000384129 70 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 MIR325-201ENST00000385260 98 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC092634.6-201ENST00000418558 192 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 DPRXP1-201ENST00000426312 460 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 UBE2FP3-201ENST00000436366 524 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 MOB1AP2-201ENST00000446060 614 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AL353718.1-201ENST00000451028 517 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 MRPS36P2-201ENST00000512569 299 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 RNU5F-8P-201ENST00000515941 111 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 Y_RNA.675-201ENST00000516389 149 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC084824.5-201ENST00000612009 413 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 uc_338.12-201ENST00000616344 181 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.67□□□□□ -2.14
SCN9AQ15858 AC116618.1-201ENST00000634617 774 ntBASIC1.67□□□□□ -2.14
SCN9AQ15858 AC009812.4-201ENST00000569134 1805 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AL356473.1-201ENST00000406203 1408 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AL355497.1-201ENST00000406262 551 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 SNORD23.1-201ENST00000408212 104 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 CCDC58P2-201ENST00000417131 366 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN9AQ15858 RPL7L1P10-201ENST00000427790 463 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 MTCYBP32-201ENST00000427945 1084 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 MICF-203ENST00000432679 129 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 THAP5P1-201ENST00000439089 262 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC092427.1-201ENST00000439177 601 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN9AQ15858 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AC008427.1-201ENST00000503102 655 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AC022447.3-201ENST00000506865 495 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC114786.4-201ENST00000508771 728 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AC114797.1-201ENST00000514003 728 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AC023813.2-201ENST00000564321 469 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC009127.3-201ENST00000570531 403 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AL354943.1-201ENST00000572103 781 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC090616.3-201ENST00000582184 217 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN9AQ15858 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN9AQ15858 AC024257.5-201ENST00000612739 531 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 UCA1.1-201ENST00000620952 75 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AP000943.4-201ENST00000622912 357 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 AC079597.1-201ENST00000624306 508 ntBASIC1.66□□□□□ -2.14
SCN9AQ15858 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SCN9AQ15858 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SCN9AQ15858 AL049641.1-201ENST00000441055 1948 ntBASIC1.65□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms