Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.32□□□□□ -1.72
RNF4P78317 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 DHX9P1-201ENST00000436565 3076 ntBASIC4.32□□□□□ -1.72
RNF4P78317 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 AC022893.2-201ENST00000564832 3296 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.31□□□□□ -1.72
RNF4P78317 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
RNF4P78317 MFSD8-216ENST00000641147 4009 ntBASIC4.31□□□□□ -1.72
RNF4P78317 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.31□□□□□ -1.72
RNF4P78317 SNORD113.2-201ENST00000364166 89 ntBASIC4.31□□□□□ -1.72
RNF4P78317 Y_RNA.257-201ENST00000364596 102 ntBASIC4.31□□□□□ -1.72
RNF4P78317 RNA5SP505-201ENST00000364748 108 ntBASIC4.31□□□□□ -1.72
RNF4P78317 RNU6-806P-201ENST00000365147 105 ntBASIC4.31□□□□□ -1.72
RNF4P78317 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.31□□□□□ -1.72
RNF4P78317 DEFB109C-201ENST00000382575 264 ntBASIC4.31□□□□□ -1.72
RNF4P78317 DEFB109B-201ENST00000382656 264 ntBASIC4.31□□□□□ -1.72
RNF4P78317 Y_RNA.489-201ENST00000384410 101 ntBASIC4.31□□□□□ -1.72
RNF4P78317 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
RNF4P78317 RNA5SP397-201ENST00000391323 118 ntBASIC4.31□□□□□ -1.72
RNF4P78317 Y_RNA.623-201ENST00000411128 95 ntBASIC4.31□□□□□ -1.72
RNF4P78317 ELOCP20-201ENST00000422460 345 ntBASIC4.31□□□□□ -1.72
RNF4P78317 TOMM20P4-201ENST00000427861 435 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.31□□□□□ -1.72
RNF4P78317 PIGFP3-201ENST00000441918 722 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AC011753.3-201ENST00000443436 406 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AL160314.1-201ENST00000490836 438 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AC139453.3-201ENST00000493276 369 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AL359273.1-201ENST00000510918 627 ntBASIC4.31□□□□□ -1.72
RNF4P78317 NDUFB4P9-201ENST00000511646 388 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.31□□□□□ -1.72
RNF4P78317 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.31□□□□□ -1.72
RNF4P78317 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.31□□□□□ -1.72
RNF4P78317 MIR4330-201ENST00000579077 105 ntBASIC4.31□□□□□ -1.72
RNF4P78317 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.31□□□□□ -1.72
RNF4P78317 VN1R91P-201ENST00000594377 169 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AC234771.5-201ENST00000600161 514 ntBASIC4.31□□□□□ -1.72
RNF4P78317 AC006023.2-201ENST00000609916 167 ntBASIC4.31□□□□□ -1.72
RNF4P78317 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.31□□□□□ -1.72
RNF4P78317 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
RNF4P78317 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.31□□□□□ -1.72
RNF4P78317 AC233263.6-201ENST00000631132 1963 ntBASIC4.31□□□□□ -1.72
RNF4P78317 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
RNF4P78317 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
RNF4P78317 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 ZNF299P-201ENST00000406845 1804 ntBASIC4.3□□□□□ -1.72
RNF4P78317 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 RN7SKP115-201ENST00000363177 317 ntBASIC4.3□□□□□ -1.72
RNF4P78317 Y_RNA.214-201ENST00000364201 112 ntBASIC4.3□□□□□ -1.72
RNF4P78317 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
RNF4P78317 Y_RNA.483-201ENST00000384380 101 ntBASIC4.3□□□□□ -1.72
RNF4P78317 MT-TW-201ENST00000387382 68 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AL022722.2-201ENST00000402519 180 ntBASIC4.3□□□□□ -1.72
RNF4P78317 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AL356968.1-201ENST00000416622 474 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.3□□□□□ -1.72
RNF4P78317 AC245028.1-201ENST00000423259 256 ntBASIC4.3□□□□□ -1.72
RNF4P78317 ARL5AP4-201ENST00000430731 512 ntBASIC4.3□□□□□ -1.72
RNF4P78317 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 AC073910.1-201ENST00000445047 438 ntBASIC4.3□□□□□ -1.72
RNF4P78317 snoU13.24-201ENST00000458998 104 ntBASIC4.3□□□□□ -1.72
RNF4P78317 RN7SL738P-201ENST00000470264 297 ntBASIC4.3□□□□□ -1.72
RNF4P78317 S100A11P1-201ENST00000477525 312 ntBASIC4.3□□□□□ -1.72
RNF4P78317 KC877373.1-201ENST00000479066 408 ntBASIC4.3□□□□□ -1.72
RNF4P78317 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AC093852.1-201ENST00000503587 266 ntBASIC4.3□□□□□ -1.72
RNF4P78317 RNU6-408P-201ENST00000515910 100 ntBASIC4.3□□□□□ -1.72
RNF4P78317 RNU2-53P-201ENST00000516257 147 ntBASIC4.3□□□□□ -1.72
RNF4P78317 Y_RNA.680-201ENST00000516441 93 ntBASIC4.3□□□□□ -1.72
RNF4P78317 HSPE1P20-201ENST00000538133 289 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AC090517.1-201ENST00000569307 266 ntBASIC4.3□□□□□ -1.72
RNF4P78317 MIR3921-201ENST00000577308 85 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AC008121.1-201ENST00000603244 268 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 AC004852.3-201ENST00000614131 326 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AL161629.2-201ENST00000615347 275 ntBASIC4.3□□□□□ -1.72
RNF4P78317 uc_338.18-201ENST00000615451 175 ntBASIC4.3□□□□□ -1.72
RNF4P78317 AC090132.2-201ENST00000615881 347 ntBASIC4.3□□□□□ -1.72
RNF4P78317 SNX18P1Y-201ENST00000616231 511 ntBASIC4.3□□□□□ -1.72
RNF4P78317 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.3□□□□□ -1.72
RNF4P78317 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNF4P78317 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
RNF4P78317 AC032011.1-201ENST00000611703 1549 ntBASIC4.3□□□□□ -1.72
RNF4P78317 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
RNF4P78317 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.3□□□□□ -1.72
RNF4P78317 MAPK10-320ENST00000641462 6696 ntBASIC4.3□□□□□ -1.72
RNF4P78317 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.29□□□□□ -1.72
RNF4P78317 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
RNF4P78317 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNF4P78317 RNU6-1026P-201ENST00000384465 108 ntBASIC4.29□□□□□ -1.72
RNF4P78317 MIR628-201ENST00000385229 95 ntBASIC4.29□□□□□ -1.72
RNF4P78317 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms