Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 SNORA31.20-201ENST00000517111 133 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 HMGB1P41-201ENST00000520234 440 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 IGHV3-76-201ENST00000522465 295 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 FAM60DP-201ENST00000524174 632 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 MTND1P35-201ENST00000526739 508 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC011979.2-201ENST00000527568 352 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC123904.3-201ENST00000547218 814 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL512310.1-201ENST00000548639 172 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL359212.1-201ENST00000556608 614 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC012182.1-201ENST00000570133 895 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 MTCO3P24-201ENST00000572729 782 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL355073.2-201ENST00000612106 557 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 TUG1_2.1-201ENST00000614234 87 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC004696.1-201ENST00000614345 607 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AP001350.1-201ENST00000601906 1524 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 ZNF680P1-201ENST00000436625 1469 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC004972.1-201ENST00000623934 2209 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 HSPE1P11-201ENST00000339579 310 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 MIR22-201ENST00000362190 85 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 RNU6-1120P-201ENST00000362988 108 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 Y_RNA.89-201ENST00000363031 102 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 U3.6-201ENST00000363622 211 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 RNU6-534P-201ENST00000364877 106 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 Y_RNA.295-201ENST00000364918 102 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 RNU6-1181P-201ENST00000384191 106 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 MIR558-201ENST00000384920 94 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL136372.1-201ENST00000403060 228 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 RPL21P24-201ENST00000413752 448 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 RPL23AP22-201ENST00000437556 453 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC079781.2-201ENST00000446424 169 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 WASF1P1-201ENST00000447560 1131 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC008481.1-201ENST00000463278 396 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC117440.1-201ENST00000474107 571 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 RNU6-1281P-201ENST00000516223 105 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 HMGN1P28-201ENST00000521340 364 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC128657.1-201ENST00000549459 145 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC034105.3-201ENST00000565294 442 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL022099.1-201ENST00000604551 712 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC005000.2-201ENST00000605468 310 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC008536.2-201ENST00000607284 349 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AL603758.1-201ENST00000618654 241 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 AC007318.2-201ENST00000620999 243 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
SIX4Q9UIU6 DDX10P1-201ENST00000448545 1933 ntBASIC3.27□□□□□ -1.89
SIX4Q9UIU6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 Y_RNA.38-201ENST00000362617 102 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 RNA5SP383-201ENST00000362934 120 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 RNU6-1322P-201ENST00000364309 107 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 Y_RNA.303-201ENST00000364998 94 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 RNU6-1158P-201ENST00000391167 107 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AL078595.1-201ENST00000404458 226 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 RPL32P35-201ENST00000415214 394 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 OR2AS1P-201ENST00000427827 319 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.26□□□□□ -1.89
SIX4Q9UIU6 AL606489.2-201ENST00000433886 234 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 RPS20P5-201ENST00000434808 360 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 HMGN2P20-201ENST00000437531 273 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 BNIP3P2-201ENST00000441221 577 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 MTCO3P45-201ENST00000443036 613 ntBASIC3.26□□□□□ -1.89
SIX4Q9UIU6 GAPDHP27-201ENST00000447427 1020 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms