Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC009414.1-201ENST00000427200 443 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 WASF1P1-201ENST00000447560 1131 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AL590365.1-201ENST00000450788 243 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 CECR9-201ENST00000453421 199 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 SNORD97-201ENST00000459187 142 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 RPS26P21-201ENST00000475397 348 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 SRIP1-201ENST00000489235 288 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC098862.1-201ENST00000504991 413 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 SUMO2P6-201ENST00000505273 288 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 SNORA31.3-201ENST00000516029 96 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 MTCO1P47-201ENST00000523889 1271 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 SUB1P1-201ENST00000524415 382 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC128657.1-201ENST00000549459 145 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC005498.1-201ENST00000592125 465 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 WISP1-OT1-201ENST00000602893 642 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 RPL12P50-201ENST00000603116 116 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AL359999.1-201ENST00000604513 294 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC008498.1-201ENST00000613012 531 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC027807.2-201ENST00000616099 408 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC090617.7-201ENST00000623952 126 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC068057.2-201ENST00000624047 895 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 AC092608.2-201ENST00000624427 218 ntBASIC2.62□□□□□ -1.99
LHX3Q9UBR4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
LHX3Q9UBR4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL161431.1-201ENST00000618966 4205 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 UBE2L2-201ENST00000254302 429 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RNY4P16-201ENST00000364768 94 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RNU6-701P-201ENST00000384059 107 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RNA5SP210-201ENST00000391034 120 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RAC1P6-201ENST00000423911 575 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC104651.1-201ENST00000427559 735 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC093151.1-201ENST00000427711 313 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 SAR1AP4-201ENST00000429225 591 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 KATNBL1P6-201ENST00000453433 915 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RBM43P1-201ENST00000476891 1081 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RPL9P33-201ENST00000484311 566 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 SNORA31.26-201ENST00000517250 137 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC107934.1-201ENST00000522215 217 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 RPS3AP4-201ENST00000555161 764 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC025281.1-201ENST00000567026 265 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC109446.2-201ENST00000567872 497 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 ROCK1P1-201ENST00000573767 549 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 MIR5697-201ENST00000578045 78 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC010620.2-201ENST00000600135 313 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.6-201ENST00000603753 252 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.11-201ENST00000604059 253 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL161798.1-201ENST00000604630 131 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC008162.1-201ENST00000604718 254 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.1-201ENST00000604752 252 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.5-201ENST00000605253 252 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.12-201ENST00000605291 253 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.8-201ENST00000605353 252 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL670379.7-201ENST00000605823 252 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC107294.1-201ENST00000609524 467 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC104010.1-201ENST00000616889 150 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 FRG1KP-201ENST00000623592 341 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC007494.3-201ENST00000624660 743 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC084035.1-201ENST00000634543 607 ntBASIC2.61□□□□□ -1.99
LHX3Q9UBR4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.61□□□□□ -1.99
LHX3Q9UBR4 AL136360.1-201ENST00000503377 1900 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 AL359693.1-201ENST00000614959 2407 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.6□□□□□ -1.99
LHX3Q9UBR4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms