Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RNA5SP337-201ENST00000517007 109 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 RNU6-430P-201ENST00000517078 107 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 RNU6-64P-201ENST00000517119 105 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AP003392.2-201ENST00000527269 208 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 MIR4697-201ENST00000582977 78 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AC105224.1-201ENST00000587055 421 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AL161729.4-201ENST00000604650 476 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AC008498.1-201ENST00000613012 531 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AC013476.2-201ENST00000614456 459 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 AC095031.1-201ENST00000623685 672 ntBASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC28BQ9BUN5 SNORA36C-201ENST00000384289 132 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 TXNP7-201ENST00000406296 293 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 RNA5SP181-201ENST00000410246 98 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC127391.1-201ENST00000411737 98 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 RPS15AP12-201ENST00000419498 388 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 USP12PX-201ENST00000432383 1057 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AP002812.1-201ENST00000495378 474 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC105252.1-201ENST00000503089 286 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 MTND2P33-201ENST00000506452 1031 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AL359273.1-201ENST00000510918 627 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC091133.4-201ENST00000511142 308 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 RNU2-10P-201ENST00000516375 211 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 DUXAP2-201ENST00000519198 589 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 PSMA2P1-201ENST00000526365 646 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AP003072.2-201ENST00000527756 676 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC123904.3-201ENST00000547218 814 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AL391156.1-201ENST00000554965 554 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC010546.1-201ENST00000569391 485 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 RPL23AP84-201ENST00000571193 464 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 MIR3913-1-201ENST00000577744 102 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 MIR4446-201ENST00000578505 67 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 MIR5004-201ENST00000579078 107 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 MTND1P15-201ENST00000579262 949 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 MIR4293-201ENST00000584305 78 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 ZNF861P-201ENST00000588126 639 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC020895.1-201ENST00000595362 272 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AP002826.1-201ENST00000608835 315 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC011890.2-201ENST00000613393 294 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AL133173.2-201ENST00000614270 90 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC099842.1-201ENST00000619919 596 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 FRG1KP-201ENST00000623592 341 ntBASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC28BQ9BUN5 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 HSPE1P11-201ENST00000339579 310 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 RNU5A-1-201ENST00000362698 116 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 RNU6-511P-201ENST00000363496 107 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 RNY1P12-201ENST00000364251 105 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 RNU6-259P-201ENST00000383999 107 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 Y_RNA.517-201ENST00000384551 106 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 RPS3AP36-201ENST00000398190 775 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 ISCA1P6-201ENST00000427740 390 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 AC104850.1-201ENST00000435940 476 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC28BQ9BUN5 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms