Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SNRPFP4-201ENST00000456366 242 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.02□□□□□ -1.93
USP28Q96RU2 snoU109.1-201ENST00000459339 135 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC026427.2-201ENST00000506228 536 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USP28Q96RU2 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.02□□□□□ -1.93
USP28Q96RU2 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 SETP2-201ENST00000553886 926 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AC245505.1-201ENST00000556398 224 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.02□□□□□ -1.93
USP28Q96RU2 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.02□□□□□ -1.93
USP28Q96RU2 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC025165.5-201ENST00000602802 578 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL161729.4-201ENST00000604650 476 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AC012443.1-201ENST00000605605 231 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AP002826.1-201ENST00000608835 315 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AC091834.1-201ENST00000614543 472 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL159972.1-201ENST00000625150 448 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AC010149.2-201ENST00000637608 315 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
USP28Q96RU2 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.01□□□□□ -1.93
USP28Q96RU2 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP28Q96RU2 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP28Q96RU2 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.01□□□□□ -1.93
USP28Q96RU2 GNG5P1-201ENST00000255500 204 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 MIR19A-201ENST00000384878 82 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
USP28Q96RU2 AL136372.1-201ENST00000403060 228 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 MIR1289-1-201ENST00000408836 144 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 C1DP2-201ENST00000418167 426 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.01□□□□□ -1.93
USP28Q96RU2 RPL27AP8-201ENST00000424277 446 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC007283.2-201ENST00000424739 197 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC019097.1-201ENST00000424783 735 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AL358934.1-201ENST00000432346 324 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.01□□□□□ -1.93
USP28Q96RU2 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.01□□□□□ -1.93
USP28Q96RU2 MTCYBP1-201ENST00000454315 1119 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AL359385.1-201ENST00000456509 365 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
USP28Q96RU2 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.01□□□□□ -1.93
USP28Q96RU2 CDC42P4-201ENST00000510507 563 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 RN7SKP298-201ENST00000515950 94 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 RNU6-430P-201ENST00000517078 107 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.01□□□□□ -1.93
USP28Q96RU2 AP001429.1-201ENST00000602568 530 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC080078.2-201ENST00000603766 501 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC011451.2-201ENST00000604303 598 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC087241.4-201ENST00000612441 480 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 AC026585.1-201ENST00000619582 524 ntBASIC3.01□□□□□ -1.93
USP28Q96RU2 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP28Q96RU2 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USP28Q96RU2 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.01□□□□□ -1.93
USP28Q96RU2 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3□□□□□ -1.93
USP28Q96RU2 RNU5E-1-201ENST00000362477 120 ntBASIC3□□□□□ -1.93
USP28Q96RU2 RNY4P24-201ENST00000362735 96 ntBASIC3□□□□□ -1.93
USP28Q96RU2 RN7SKP226-201ENST00000364912 300 ntBASIC3□□□□□ -1.93
USP28Q96RU2 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 RNU6-1215P-201ENST00000384441 102 ntBASIC3□□□□□ -1.93
USP28Q96RU2 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3□□□□□ -1.93
USP28Q96RU2 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 RPL7P10-201ENST00000417407 739 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3□□□□□ -1.93
USP28Q96RU2 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3□□□□□ -1.93
USP28Q96RU2 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3□□□□□ -1.93
USP28Q96RU2 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3□□□□□ -1.93
USP28Q96RU2 AC011816.1-201ENST00000441346 546 ntBASIC3□□□□□ -1.93
USP28Q96RU2 Y_RNA.672-201ENST00000516289 104 ntBASIC3□□□□□ -1.93
USP28Q96RU2 RNU6-1220P-201ENST00000517126 108 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AC016957.1-201ENST00000534895 309 ntBASIC3□□□□□ -1.93
USP28Q96RU2 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3□□□□□ -1.93
USP28Q96RU2 EIF1P4-201ENST00000572664 335 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3□□□□□ -1.93
USP28Q96RU2 AL158211.4-201ENST00000606988 584 ntBASIC3□□□□□ -1.93
USP28Q96RU2 RNU6-87P-201ENST00000607561 108 ntBASIC3□□□□□ -1.93
USP28Q96RU2 TUG1_1.1-201ENST00000610654 145 ntBASIC3□□□□□ -1.93
USP28Q96RU2 UBE2Q2P2-203ENST00000613592 761 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AC108479.2-201ENST00000617314 601 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AC068792.1-201ENST00000621354 417 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AC068880.5-201ENST00000624331 290 ntBASIC3□□□□□ -1.93
USP28Q96RU2 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3□□□□□ -1.93
USP28Q96RU2 MTND5P26-201ENST00000426018 1752 ntBASIC3□□□□□ -1.93
USP28Q96RU2 AC099654.7-201ENST00000635788 2127 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.99□□□□□ -1.93
USP28Q96RU2 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.99□□□□□ -1.93
USP28Q96RU2 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
USP28Q96RU2 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
USP28Q96RU2 RNU6-1078P-201ENST00000364522 103 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 RNU6-259P-201ENST00000383999 107 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 BEND7P1-201ENST00000422058 457 ntBASIC2.99□□□□□ -1.93
USP28Q96RU2 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.99□□□□□ -1.93
USP28Q96RU2 UBE2V1P13-201ENST00000436983 439 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms