Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL161734.1-201ENST00000609720 557 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 AC245517.5-201ENST00000611529 162 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 AC013562.2-201ENST00000611632 603 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS35Q96QK1 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC007998.5-201ENST00000622938 237 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS35Q96QK1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
VPS35Q96QK1 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS35Q96QK1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS35Q96QK1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.54□□□□□ -2
VPS35Q96QK1 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS35Q96QK1 Y_RNA.46-201ENST00000362695 102 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 SNORA68.1-201ENST00000364537 132 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS35Q96QK1 MIR27B-201ENST00000385129 97 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 RPS4XP8-201ENST00000402039 771 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 RNA5SP181-201ENST00000410246 98 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.54□□□□□ -2
VPS35Q96QK1 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.54□□□□□ -2
VPS35Q96QK1 AC092427.1-202ENST00000430569 476 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 TIMM9P1-201ENST00000436122 256 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AL606662.1-201ENST00000445763 553 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 ST13P20-201ENST00000447996 1065 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.54□□□□□ -2
VPS35Q96QK1 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 RPS3P1-201ENST00000456781 192 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 MTCO1P42-201ENST00000457379 726 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC107626.1-201ENST00000471084 183 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.54□□□□□ -2
VPS35Q96QK1 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.54□□□□□ -2
VPS35Q96QK1 SNORA31.11-201ENST00000516528 139 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 RNA5SP82-201ENST00000516707 92 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 RNA5SP165-201ENST00000517142 115 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.54□□□□□ -2
VPS35Q96QK1 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS35Q96QK1 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 AC009163.5-201ENST00000575421 637 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.54□□□□□ -2
VPS35Q96QK1 AP000240.1-201ENST00000609910 452 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC090970.3-201ENST00000612566 866 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 AC034102.8-201ENST00000615146 484 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 U2.21-201ENST00000637295 81 ntBASIC2.54□□□□□ -2
VPS35Q96QK1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS35Q96QK1 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
VPS35Q96QK1 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 AL359693.1-201ENST00000614959 2407 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.53□□□□□ -2
VPS35Q96QK1 Y_RNA.97-201ENST00000363094 102 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 RNU6-461P-201ENST00000364195 107 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 DEFA7P-201ENST00000382676 285 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.53□□□□□ -2
VPS35Q96QK1 NDUFS5P1-201ENST00000405668 289 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC098592.1-201ENST00000419352 333 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 BPY2DP-201ENST00000422208 265 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 SKA2P1-201ENST00000425592 390 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 DPPA3P1-201ENST00000448050 469 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC072039.1-201ENST00000477611 581 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.53□□□□□ -2
VPS35Q96QK1 RPF2P2-201ENST00000504693 896 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC119751.5-201ENST00000514077 770 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.53□□□□□ -2
VPS35Q96QK1 RNU4-29P-201ENST00000515943 174 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC090136.1-201ENST00000520009 240 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC009097.3-201ENST00000563557 1018 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 ISCA1P3-201ENST00000577104 373 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 MIR4672-201ENST00000583126 81 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 BX664608.1-201ENST00000610519 487 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 AC068057.2-201ENST00000624047 895 ntBASIC2.53□□□□□ -2
VPS35Q96QK1 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.53□□□□□ -2
VPS35Q96QK1 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS35Q96QK1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms