Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 USP9YP34-201ENST00000453983 808 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA3P55318 RPL23AP63-201ENST00000498752 471 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 TPT1P8-201ENST00000510120 555 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 RNA5SP135-201ENST00000517019 125 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA3P55318 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
FOXA3P55318 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.15□□□□□ -2.23
FOXA3P55318 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA3P55318 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.15□□□□□ -2.23
FOXA3P55318 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA3P55318 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.15□□□□□ -2.23
FOXA3P55318 AP001429.1-201ENST00000602568 530 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.15□□□□□ -2.23
FOXA3P55318 AC103810.8-201ENST00000607347 118 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AP001033.2-201ENST00000609701 1003 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AC087241.4-201ENST00000612441 480 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AC013476.2-201ENST00000614456 459 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 MIR7974-201ENST00000615835 79 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AC084768.2-201ENST00000622736 221 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AL159972.1-201ENST00000625150 448 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 SCARNA15.3-201ENST00000626315 122 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 SCARNA4.1-201ENST00000628597 123 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 MIR3199-2-201ENST00000636243 86 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 MTND4P23-201ENST00000447723 1363 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.23
FOXA3P55318 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.14□□□□□ -2.23
FOXA3P55318 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA3P55318 RNU6-1005P-201ENST00000384519 107 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA3P55318 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA3P55318 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA3P55318 HSPE1P24-201ENST00000450782 238 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 USP9YP10-201ENST00000454868 628 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.14□□□□□ -2.23
FOXA3P55318 AC021146.2-201ENST00000504736 556 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA3P55318 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.14□□□□□ -2.23
FOXA3P55318 FAM206BP-201ENST00000510179 541 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 Y_RNA.675-201ENST00000516389 149 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA3P55318 NACAP3-201ENST00000552100 481 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 MIR4435-1-201ENST00000582552 80 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.14□□□□□ -2.23
FOXA3P55318 AC022202.1-201ENST00000613515 211 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 CDC27P3-201ENST00000635418 1910 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA3P55318 AL161722.3-201ENST00000605789 2983 ntBASIC1.14□□□□□ -2.23
FOXA3P55318 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
FOXA3P55318 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.13□□□□□ -2.23
FOXA3P55318 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
FOXA3P55318 RNU6-582P-201ENST00000362989 107 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 Z98749.2-208ENST00000381646 500 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 MIR1304-201ENST00000408243 91 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA3P55318 MTND4P24-201ENST00000424002 397 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 VN1R108P-201ENST00000431580 830 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 TPTE2P1-204ENST00000435256 593 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 RSU1P2-202ENST00000437884 485 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC002542.1-201ENST00000440683 193 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
FOXA3P55318 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 HGF-207ENST00000453018 721 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.13□□□□□ -2.23
FOXA3P55318 AMD1P1-201ENST00000457220 922 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 CYP2C59P-201ENST00000457790 269 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 RPS20P20-201ENST00000460498 340 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC117503.1-201ENST00000472241 394 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.13□□□□□ -2.23
FOXA3P55318 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 SNORA4.4-201ENST00000515921 135 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 SNORA44.1-201ENST00000517031 108 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
FOXA3P55318 AC024224.1-201ENST00000538284 609 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 ARL2BPP2-201ENST00000550907 489 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.13□□□□□ -2.23
FOXA3P55318 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
FOXA3P55318 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA3P55318 AC009974.1-201ENST00000608881 455 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC103710.2-201ENST00000609912 942 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC024257.5-201ENST00000612739 531 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AL163051.2-201ENST00000618976 735 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 MIR5739-201ENST00000619803 80 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.13□□□□□ -2.23
FOXA3P55318 Z99571.1-201ENST00000636677 394 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 AC010149.2-201ENST00000637608 315 ntBASIC1.13□□□□□ -2.23
FOXA3P55318 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
FOXA3P55318 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.12□□□□□ -2.23
FOXA3P55318 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.12□□□□□ -2.23
FOXA3P55318 SNORD51.1-201ENST00000365405 77 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 USP9YP19-201ENST00000412165 485 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 USP9YP13-201ENST00000417797 480 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 EIF4EP2-201ENST00000422816 654 ntBASIC1.12□□□□□ -2.23
FOXA3P55318 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA3P55318 AC092393.1-201ENST00000439625 742 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms