Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC1P18827 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC1P18827 RAC1P5-201ENST00000512182 576 ntBASIC2.49□□□□□ -2.01
SDC1P18827 RNA5SP290-201ENST00000517133 127 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AC022878.1-201ENST00000530684 149 ntBASIC2.49□□□□□ -2.01
SDC1P18827 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AC007834.2-201ENST00000536310 343 ntBASIC2.49□□□□□ -2.01
SDC1P18827 OSBPL9P5-201ENST00000542581 171 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AL391261.3-201ENST00000557194 520 ntBASIC2.49□□□□□ -2.01
SDC1P18827 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC1P18827 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.49□□□□□ -2.01
SDC1P18827 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.49□□□□□ -2.01
SDC1P18827 HMGN1P30-201ENST00000589286 268 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AF131215.7-201ENST00000602443 707 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AC098826.3-201ENST00000603823 466 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.49□□□□□ -2.01
SDC1P18827 AL359999.1-201ENST00000604513 294 ntBASIC2.49□□□□□ -2.01
SDC1P18827 RPL23AP88-201ENST00000605759 454 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AC239868.4-201ENST00000608318 671 ntBASIC2.49□□□□□ -2.01
SDC1P18827 FTX_3.1-201ENST00000610451 147 ntBASIC2.49□□□□□ -2.01
SDC1P18827 AL161629.2-201ENST00000615347 275 ntBASIC2.49□□□□□ -2.01
SDC1P18827 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.49□□□□□ -2.01
SDC1P18827 RNU6-1167P-201ENST00000363227 94 ntBASIC2.48□□□□□ -2.01
SDC1P18827 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
SDC1P18827 RNU6-14P-201ENST00000384630 106 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AL021407.1-201ENST00000404531 386 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC1P18827 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 MTND1P28-201ENST00000435623 950 ntBASIC2.48□□□□□ -2.01
SDC1P18827 ARPC3P1-201ENST00000437218 533 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AC126182.1-201ENST00000478134 357 ntBASIC2.48□□□□□ -2.01
SDC1P18827 BET1P1-201ENST00000482276 359 ntBASIC2.48□□□□□ -2.01
SDC1P18827 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC1P18827 TBCAP3-201ENST00000512475 312 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AC119751.5-201ENST00000514077 770 ntBASIC2.48□□□□□ -2.01
SDC1P18827 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.48□□□□□ -2.01
SDC1P18827 RNA5SP367-201ENST00000516557 118 ntBASIC2.48□□□□□ -2.01
SDC1P18827 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC1P18827 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.48□□□□□ -2.01
SDC1P18827 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 AL161798.1-201ENST00000604630 131 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AL136363.1-201ENST00000605349 337 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SDC1P18827 AC034102.8-201ENST00000615146 484 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AC002064.3-201ENST00000623448 346 ntBASIC2.48□□□□□ -2.01
SDC1P18827 AC110079.1-202ENST00000635213 138 ntBASIC2.48□□□□□ -2.01
SDC1P18827 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.48□□□□□ -2.01
SDC1P18827 Y_RNA.245-201ENST00000364493 95 ntBASIC2.47□□□□□ -2.01
SDC1P18827 SNORD116-8-201ENST00000384365 95 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AL360182.1-201ENST00000397433 468 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.47□□□□□ -2.01
SDC1P18827 USP9YP20-201ENST00000419224 558 ntBASIC2.47□□□□□ -2.01
SDC1P18827 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
SDC1P18827 AL365496.1-201ENST00000426885 215 ntBASIC2.47□□□□□ -2.01
SDC1P18827 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.47□□□□□ -2.01
SDC1P18827 ELOCP14-201ENST00000428070 331 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC093106.2-201ENST00000428212 385 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC105272.1-201ENST00000438604 198 ntBASIC2.47□□□□□ -2.01
SDC1P18827 ELOCP7-201ENST00000439968 331 ntBASIC2.47□□□□□ -2.01
SDC1P18827 CYCSP32-201ENST00000440548 321 ntBASIC2.47□□□□□ -2.01
SDC1P18827 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC1P18827 RPS27AP8-201ENST00000452665 445 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AP000705.1-201ENST00000454567 350 ntBASIC2.47□□□□□ -2.01
SDC1P18827 RNU7-23P-201ENST00000459465 62 ntBASIC2.47□□□□□ -2.01
SDC1P18827 RPS29P12-201ENST00000460178 152 ntBASIC2.47□□□□□ -2.01
SDC1P18827 MTND4LP3-201ENST00000468320 276 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.47□□□□□ -2.01
SDC1P18827 SRIP1-201ENST00000489235 288 ntBASIC2.47□□□□□ -2.01
SDC1P18827 RNA5SP282-201ENST00000516355 108 ntBASIC2.47□□□□□ -2.01
SDC1P18827 RNA5SP337-201ENST00000517007 109 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC090136.1-201ENST00000520009 240 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AP003467.2-201ENST00000520175 319 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC128657.1-201ENST00000549459 145 ntBASIC2.47□□□□□ -2.01
SDC1P18827 AC009977.1-201ENST00000586015 570 ntBASIC2.47□□□□□ -2.01
SDC1P18827 RNU6-87P-201ENST00000607561 108 ntBASIC2.47□□□□□ -2.01
SDC1P18827 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.47□□□□□ -2.01
SDC1P18827 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SDC1P18827 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
SDC1P18827 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC1P18827 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.46□□□□□ -2.02
SDC1P18827 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SDC1P18827 SMIM11P1-201ENST00000369586 178 ntBASIC2.46□□□□□ -2.02
SDC1P18827 Y_RNA.598-201ENST00000410480 95 ntBASIC2.46□□□□□ -2.02
SDC1P18827 HMGN2P35-201ENST00000412164 270 ntBASIC2.46□□□□□ -2.02
SDC1P18827 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.46□□□□□ -2.02
SDC1P18827 RPLP0P7-201ENST00000416050 667 ntBASIC2.46□□□□□ -2.02
SDC1P18827 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.46□□□□□ -2.02
SDC1P18827 SEPT2P1-201ENST00000419651 180 ntBASIC2.46□□□□□ -2.02
SDC1P18827 HMGN2P30-201ENST00000423237 256 ntBASIC2.46□□□□□ -2.02
SDC1P18827 RAC1P6-201ENST00000423911 575 ntBASIC2.46□□□□□ -2.02
SDC1P18827 AC007283.2-201ENST00000424739 197 ntBASIC2.46□□□□□ -2.02
SDC1P18827 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.46□□□□□ -2.02
SDC1P18827 CECR9-201ENST00000453421 199 ntBASIC2.46□□□□□ -2.02
SDC1P18827 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC1P18827 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms