Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU2-19P-201ENST00000517288 84 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AC008555.8-201ENST00000623602 2168 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AL356473.1-201ENST00000406203 1408 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 SFR1P1-201ENST00000403720 688 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 VN1R36P-201ENST00000414936 291 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 SEPT2P1-201ENST00000419651 180 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 RPL7P34-201ENST00000433316 712 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AC104108.1-201ENST00000509930 412 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 SNORA48.11-201ENST00000517015 89 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 AC084373.1-201ENST00000603311 235 ntBASIC1.31□□□□□ -2.2
CCDC88BA6NC98 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
CCDC88BA6NC98 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.3□□□□□ -2.2
CCDC88BA6NC98 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AC087884.1-201ENST00000469738 328 ntBASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AC018437.1-201ENST00000492214 406 ntBASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AC023141.11-201ENST00000508864 202 ntBASIC1.3□□□□□ -2.2
CCDC88BA6NC98 RNA5SP330-201ENST00000517096 96 ntBASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AP005902.1-201ENST00000521358 186 ntBASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC88BA6NC98 AC040174.2-201ENST00000602701 465 ntBASIC1.3□□□□□ -2.2
CCDC88BA6NC98 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC025263.3-201ENST00000622965 1396 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 RNA5SP257-201ENST00000363023 116 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 Y_RNA.115-201ENST00000363272 98 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC244453.4-201ENST00000419150 388 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 RPS15AP40-201ENST00000419621 391 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC246680.2-201ENST00000422106 389 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 TMEM167AP1-201ENST00000423409 219 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC244035.1-201ENST00000430042 390 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.29□□□□□ -2.2
CCDC88BA6NC98 RNU7-27P-201ENST00000459281 62 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC108078.1-201ENST00000508073 725 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC004812.1-201ENST00000540773 146 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 CYCSP2-201ENST00000558168 301 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC133485.1-201ENST00000567176 124 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC138907.6-201ENST00000568401 126 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AC135507.1-201ENST00000607214 561 ntBASIC1.29□□□□□ -2.2
CCDC88BA6NC98 AL589743.1-201ENST00000551932 2712 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 RNU6-19P-201ENST00000384718 107 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 MIR508-201ENST00000384857 115 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC88BA6NC98 AC117503.1-201ENST00000472241 394 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 RPS27P26-201ENST00000494583 239 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 AC021146.2-201ENST00000504736 556 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 AC084033.1-201ENST00000550830 633 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 MIR6864-201ENST00000617935 70 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 AC010487.4-201ENST00000637027 61 ntBASIC1.28□□□□□ -2.2
CCDC88BA6NC98 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CCDC88BA6NC98 CR848007.1-201ENST00000442354 1699 ntBASIC1.28□□□□□ -2.21
CCDC88BA6NC98 AC008163.1-202ENST00000636004 2889 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 SNORD114-23-201ENST00000363536 72 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 Y_RNA.258-201ENST00000364613 105 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 FCF1P2-201ENST00000415284 583 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC88BA6NC98 AC107032.1-201ENST00000485945 480 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 TPT1P8-201ENST00000510120 555 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 SULT1C2P1-202ENST00000562418 459 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 AC092474.3-201ENST00000603022 568 ntBASIC1.27□□□□□ -2.21
CCDC88BA6NC98 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CCDC88BA6NC98 MIR126-201ENST00000362291 85 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 RNA5SP499-201ENST00000363982 119 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 RNU6ATAC31P-201ENST00000408513 126 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AL031663.1-201ENST00000437445 219 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AL353689.1-201ENST00000438895 199 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 AC087465.1-201ENST00000560574 245 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 MIR4711-201ENST00000578274 70 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 FAM60BP-201ENST00000578364 658 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 MIR6835-201ENST00000621552 64 ntBASIC1.26□□□□□ -2.21
CCDC88BA6NC98 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
CCDC88BA6NC98 MIR330-201ENST00000362196 94 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 NUP35P2-201ENST00000416748 943 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 MTATP6P7-201ENST00000453315 681 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC88BA6NC98 AP001960.1-201ENST00000506494 658 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 OR5AL2P-201ENST00000532185 920 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC88BA6NC98 AC007038.2-201ENST00000608095 740 ntBASIC1.25□□□□□ -2.21
CCDC88BA6NC98 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
CCDC88BA6NC98 SNORA23-201ENST00000365128 182 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AL139397.2-201ENST00000404529 772 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms