Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AL360182.1-201ENST00000397433 468 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 RNU2-71P-201ENST00000411395 189 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 AC091390.3-201ENST00000426478 338 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 VDAC1P3-201ENST00000434069 851 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 AC073063.1-201ENST00000434352 607 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 RPS3AP52-201ENST00000435639 297 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 HMGB1P30-201ENST00000492455 606 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 RNU6-1315P-201ENST00000517187 99 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 AC006023.2-201ENST00000609916 167 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 AL138726.1-201ENST00000614873 333 ntBASIC4.81□□□□□ -1.64
DDX41Q9UJV9 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
DDX41Q9UJV9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 RNU6-50P-201ENST00000362356 103 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 SNORA31-201ENST00000362607 130 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 SNORA4.3-201ENST00000365564 137 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 RNU6-395P-201ENST00000365662 106 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 RNU6-741P-201ENST00000383889 107 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 RNU6-214P-201ENST00000384130 107 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 AL590004.1-201ENST00000405321 300 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 GPM6BP2-201ENST00000432046 144 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 FABP5P14-201ENST00000437273 393 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 GPM6BP1-201ENST00000446387 144 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 AL132838.2-201ENST00000492041 314 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 MTND5P5-201ENST00000503764 376 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 AC008526.1-201ENST00000509149 338 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 AC006270.2-201ENST00000578523 652 ntBASIC4.8□□□□□ -1.64
DDX41Q9UJV9 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
DDX41Q9UJV9 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 RNA5SP130-201ENST00000364431 114 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 RNU1-89P-201ENST00000384592 164 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 MIR134-201ENST00000385258 73 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 SNORA48.7-201ENST00000391302 135 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AL354751.2-201ENST00000415471 210 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC007919.1-201ENST00000429380 217 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AL117339.2-201ENST00000430475 180 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 RPL32P28-201ENST00000443577 397 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AL118496.2-201ENST00000448300 230 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC025554.1-201ENST00000505641 188 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC008716.1-201ENST00000511084 513 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 RNA5SP290-201ENST00000517133 127 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC053481.4-201ENST00000583164 216 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC078795.3-201ENST00000602913 472 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC084781.2-201ENST00000615568 161 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 ATP5A1P2-202ENST00000616464 443 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AC090971.5-201ENST00000621102 293 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
DDX41Q9UJV9 ZNF519P1-201ENST00000449011 1626 ntBASIC4.79□□□□□ -1.64
DDX41Q9UJV9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 USP8P1-201ENST00000494673 3183 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 Y_RNA.33-201ENST00000362591 102 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 Y_RNA.135-201ENST00000363439 95 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 Y_RNA.482-201ENST00000384377 111 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 RNU6-1179P-201ENST00000384667 107 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 MIR578-201ENST00000384828 96 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 Z85995.1-201ENST00000415547 335 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.78□□□□□ -1.64
DDX41Q9UJV9 MTND1P17-201ENST00000448961 204 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 RPL21P104-201ENST00000464143 478 ntBASIC4.78□□□□□ -1.64
DDX41Q9UJV9 AC026801.1-201ENST00000497178 464 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 156.9 ms