Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RPS24P6-201ENST00000452670 400 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 RPL31P58-201ENST00000469001 379 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC133485.1-201ENST00000567176 124 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC138907.6-201ENST00000568401 126 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC087359.1-201ENST00000508335 1740 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AL606495.1-201ENST00000422100 813 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 RPL30P6-201ENST00000475925 342 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AC022662.1-201ENST00000580252 331 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 YWHAQP7-201ENST00000603536 658 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 AL031601.2-202ENST00000622650 282 ntBASIC0.83□□□□□ -2.28
CHD9Q3L8U1 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC0.83□□□□□ -2.28
CHD9Q3L8U1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
CHD9Q3L8U1 RNU4-31P-201ENST00000384211 141 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AL500527.1-201ENST00000448532 255 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RNA5SP310-201ENST00000459084 116 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RPL30P14-201ENST00000482744 348 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 CYCSP23-201ENST00000519781 313 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 MIR5194-201ENST00000582634 120 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC106791.2-201ENST00000604680 391 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 SNORA23-201ENST00000365128 182 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 Y_RNA.549-201ENST00000384657 102 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 UBE2V1P9-201ENST00000414760 368 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RPS15AP40-201ENST00000419621 391 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AL645638.1-201ENST00000440519 361 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 OR6C72P-201ENST00000451403 892 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RNU6-351P-201ENST00000516097 100 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC018755.4-201ENST00000619715 454 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 Z69720.2-201ENST00000624755 279 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC004808.1-201ENST00000627671 721 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 MIR203B-201ENST00000636080 86 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC080100.1-201ENST00000624239 5356 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RNU6-955P-201ENST00000410497 104 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RNA5SP471-201ENST00000516971 106 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 SNORA48.11-201ENST00000517015 89 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AC106900.2-201ENST00000604994 317 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 AL050343.2-201ENST00000607338 280 ntBASIC0.82□□□□□ -2.28
CHD9Q3L8U1 RNU6-1197P-201ENST00000391183 107 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 FO393413.1-201ENST00000402892 195 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 ZNF90P2-204ENST00000419323 1075 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 RPL21P32-201ENST00000419877 477 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 RNF2P1-201ENST00000442955 1010 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 PMCHL2-203ENST00000457791 237 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC015908.1-201ENST00000478739 476 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC018437.1-201ENST00000492214 406 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC104685.1-201ENST00000502445 371 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 LRRC34P2-201ENST00000514850 553 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC112198.4-201ENST00000515450 351 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC005332.10-201ENST00000612725 619 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC008555.8-201ENST00000623602 2168 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 MIR524-201ENST00000385242 87 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 RNA5SP252-201ENST00000391131 119 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 RPS4XP3-201ENST00000398541 413 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 HMGB1P9-201ENST00000429856 646 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AL031663.1-201ENST00000437445 219 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 LSM1P1-201ENST00000438629 273 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 RPS29P28-201ENST00000446439 141 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 MRPL42P6-201ENST00000486397 371 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AP005902.1-201ENST00000521358 186 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC005786.1-201ENST00000588553 154 ntBASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.81□□□□□ -2.28
CHD9Q3L8U1 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC0.8□□□□□ -2.28
CHD9Q3L8U1 RNU6-233P-201ENST00000410845 141 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC111000.5-201ENST00000506559 1178 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC023141.11-201ENST00000508864 202 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC022690.1-201ENST00000526681 550 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 OR6C7P-201ENST00000547875 934 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC113368.1-201ENST00000603736 382 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AL138880.2-201ENST00000616214 239 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 OR5H6-203ENST00000642105 978 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 ELL2P3-201ENST00000457883 1602 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms