Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 BTF3P6-201ENST00000448054 499 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 U8.21-201ENST00000459536 136 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 RPL30P10-201ENST00000488148 337 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 BX510359.5-201ENST00000515651 304 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 RPL23AP53-201ENST00000521854 457 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AL590705.4-201ENST00000532209 134 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC120057.2-201ENST00000571520 271 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AP000787.2-201ENST00000604432 568 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 BRDTP1-201ENST00000605735 677 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC009318.2-201ENST00000610917 651 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC004852.3-201ENST00000614131 326 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC011476.5-201ENST00000615594 130 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 MIR6826-201ENST00000617808 98 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 MIR6715B-201ENST00000637172 77 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC083843.3-201ENST00000623679 2186 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.33-201ENST00000362591 102 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 SNORA17.1-201ENST00000362945 126 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 SNORD50.1-201ENST00000362987 71 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-1167P-201ENST00000363227 94 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 OR2AH1P-201ENST00000425717 928 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 U8.22-201ENST00000459141 133 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC034236.1-201ENST00000469891 373 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 MTND5P41-201ENST00000517498 206 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC010186.2-204ENST00000537668 439 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC002545.1-201ENST00000592511 181 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC006077.1-201ENST00000604746 343 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.772-201ENST00000606692 102 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC243829.7-201ENST00000633081 225 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 AL365440.1-201ENST00000436135 2167 ntBASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
HIF3AQ9Y2N7 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 NCAPGP1-201ENST00000505112 1814 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 U3.6-201ENST00000363622 211 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-1020P-201ENST00000363684 107 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 RN7SKP227-201ENST00000364445 330 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 SNORD50B-201ENST00000364995 70 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 MIR190B-201ENST00000401119 79 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 LAP3P1-201ENST00000403648 294 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 CTSL3P-202ENST00000412179 788 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 BX679664.1-201ENST00000434429 253 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 RPS29P9-201ENST00000440360 171 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 RPS21P4-201ENST00000487122 248 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 Z83818.1-201ENST00000603584 150 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 IMMP1LP3-201ENST00000604197 224 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 MIR8076-201ENST00000611401 83 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 AC015914.2-201ENST00000618167 288 ntBASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
HIF3AQ9Y2N7 Z73965.1-201ENST00000623412 2297 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms