Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP28Q96RU2 AL356585.4-201ENST00000623078 1229 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC112204.3-201ENST00000623822 332 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.07□□□□□ -1.92
USP28Q96RU2 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USP28Q96RU2 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC233263.6-201ENST00000631132 1963 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
USP28Q96RU2 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
USP28Q96RU2 Y_RNA.3-201ENST00000362331 103 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 SNORD46.1-201ENST00000364139 104 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 RNA5SP139-201ENST00000364340 117 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 SNORD21-201ENST00000383953 95 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AL356057.3-201ENST00000402607 340 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 Y_RNA.599-201ENST00000410489 109 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AL645937.1-202ENST00000421799 937 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.06□□□□□ -1.92
USP28Q96RU2 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AC004866.2-201ENST00000438285 481 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 RPL22P17-201ENST00000438729 315 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 MTND6P13-201ENST00000443510 523 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 MTND1P27-201ENST00000451117 902 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AL033528.1-201ENST00000453780 140 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.06□□□□□ -1.92
USP28Q96RU2 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.06□□□□□ -1.92
USP28Q96RU2 MTND1P3-201ENST00000484956 952 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AC112204.1-201ENST00000502591 103 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.06□□□□□ -1.92
USP28Q96RU2 RNU6-1095P-201ENST00000516148 108 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.06□□□□□ -1.92
USP28Q96RU2 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.06□□□□□ -1.92
USP28Q96RU2 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.06□□□□□ -1.92
USP28Q96RU2 MED28P6-201ENST00000558776 231 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.06□□□□□ -1.92
USP28Q96RU2 MIR4635-201ENST00000583759 79 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 DEFB131E-202ENST00000602581 683 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AL021997.1-201ENST00000605757 193 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USP28Q96RU2 AC013476.2-201ENST00000614456 459 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 AL353748.2-201ENST00000622148 471 ntBASIC3.06□□□□□ -1.92
USP28Q96RU2 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.06□□□□□ -1.92
USP28Q96RU2 AC091564.4-201ENST00000533934 2194 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC073346.2-201ENST00000624724 2058 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
USP28Q96RU2 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
USP28Q96RU2 FAM35BP-202ENST00000497389 3337 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.05□□□□□ -1.92
USP28Q96RU2 OR5J1P-201ENST00000313544 939 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
USP28Q96RU2 U8.3-201ENST00000363321 132 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 MIR135A2-201ENST00000384854 100 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 SNORD115.1-201ENST00000391109 76 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.05□□□□□ -1.92
USP28Q96RU2 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.05□□□□□ -1.92
USP28Q96RU2 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.05□□□□□ -1.92
USP28Q96RU2 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.05□□□□□ -1.92
USP28Q96RU2 AL589872.1-201ENST00000426602 288 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC010975.2-201ENST00000427781 588 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 OR4K11P-201ENST00000431829 904 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.05□□□□□ -1.92
USP28Q96RU2 AL049734.2-201ENST00000441066 616 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 GAPDHP17-201ENST00000449858 1001 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 SNORD121B-201ENST00000458838 81 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 LARP1BP2-201ENST00000486594 519 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC055855.1-201ENST00000489563 579 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
USP28Q96RU2 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.05□□□□□ -1.92
USP28Q96RU2 RPL37P25-201ENST00000507308 276 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.05□□□□□ -1.92
USP28Q96RU2 SNORA18.6-201ENST00000516792 115 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 RNU2-46P-201ENST00000517038 113 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.05□□□□□ -1.92
USP28Q96RU2 AC100870.1-201ENST00000522035 505 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AP003392.2-201ENST00000527269 208 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC123904.3-201ENST00000547218 814 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.05□□□□□ -1.92
USP28Q96RU2 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.05□□□□□ -1.92
USP28Q96RU2 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.05□□□□□ -1.92
USP28Q96RU2 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.05□□□□□ -1.92
USP28Q96RU2 AL136363.2-201ENST00000604173 851 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AL031176.1-201ENST00000604554 466 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 OR10AB1P-201ENST00000609613 938 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC091304.9-201ENST00000612091 226 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC009159.1-201ENST00000618386 642 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 AC002550.2-201ENST00000621246 394 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
USP28Q96RU2 MTND5P29-201ENST00000458676 1807 ntBASIC3.05□□□□□ -1.92
USP28Q96RU2 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
USP28Q96RU2 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.04□□□□□ -1.92
USP28Q96RU2 RNY4P34-201ENST00000364779 95 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 RNU6-359P-201ENST00000365466 108 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 MIR592-201ENST00000384959 97 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 RNA5SP210-201ENST00000391034 120 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 RNA5SP252-201ENST00000391131 119 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 RNA5SP21-201ENST00000410917 96 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms