Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC073073.2-201ENST00000609827 2578 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC068647.1-201ENST00000489539 2265 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-181P-201ENST00000363225 107 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-288P-201ENST00000363690 104 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNA5SP139-201ENST00000364340 117 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RN7SKP226-201ENST00000364912 300 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-169P-201ENST00000365336 107 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-259P-201ENST00000383999 107 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-55P-201ENST00000411092 107 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-954P-201ENST00000411355 107 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RAC1P6-201ENST00000423911 575 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC005326.1-201ENST00000429197 123 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AL353705.1-201ENST00000433468 480 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC073063.1-201ENST00000434352 607 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AL136380.1-201ENST00000447970 162 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 MTCYBP1-201ENST00000454315 1119 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC096576.1-201ENST00000489014 359 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 FCF1P3-201ENST00000496394 590 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU7-51P-201ENST00000516560 62 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU6-445P-201ENST00000516949 107 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 MTCO2P4-201ENST00000517968 247 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC011611.1-201ENST00000552179 197 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 GLUD1P4-201ENST00000590914 418 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC068790.6-201ENST00000602558 258 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 RNU1-30P-201ENST00000606575 163 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AC109347.2-201ENST00000610220 349 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 MIR4275-201ENST00000636486 87 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 MFSD8-233ENST00000641482 4860 ntBASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PDLIM3Q53GG5 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 MTND5P26-201ENST00000426018 1752 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 Y_RNA.3-201ENST00000362331 103 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 RNU6-511P-201ENST00000363496 107 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 Y_RNA.582-201ENST00000391023 95 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 SOD2P1-201ENST00000396543 562 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 ATG3P1-201ENST00000419507 911 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 PIGFP2-201ENST00000421400 651 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC133104.1-201ENST00000429100 218 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 RPS3AP46-201ENST00000448352 682 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 FABP5P13-201ENST00000452144 328 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 RNU2-27P-201ENST00000516185 142 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 RN7SKP282-201ENST00000516824 299 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 RANP9-201ENST00000519957 271 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC007991.1-201ENST00000522680 631 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 SUB1P2-201ENST00000556401 297 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 MIR3921-201ENST00000577308 85 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC098848.2-201ENST00000588023 330 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AL606834.2-201ENST00000602954 668 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC006023.1-201ENST00000603944 259 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC104763.2-201ENST00000604179 382 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC007619.2-201ENST00000605743 379 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC007684.1-201ENST00000609671 477 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AL355365.1-201ENST00000616480 294 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AL158209.2-201ENST00000619266 216 ntBASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PDLIM3Q53GG5 AC008568.2-201ENST00000623862 2313 ntBASIC2.91□□□□□ -1.94
PDLIM3Q53GG5 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms