Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.61□□□□□ -2.31
COL7A1Q02388 CCNB1IP1P3-201ENST00000454702 829 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 RPL31P58-201ENST00000469001 379 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 AC010683.1-201ENST00000473673 378 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 FO393415.2-201ENST00000480085 343 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 RNA5SP285-201ENST00000516619 119 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 SCARNA1-201ENST00000517138 166 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC106052.1-201ENST00000608029 497 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC0.61□□□□□ -2.31
COL7A1Q02388 AC006249.1-201ENST00000621223 471 ntBASIC0.61□□□□□ -2.31
COL7A1Q02388 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
COL7A1Q02388 AL591034.1-201ENST00000407447 340 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 PTGES3P2-201ENST00000407942 482 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 SNORD23.1-201ENST00000408212 104 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 OR6C66P-201ENST00000414917 930 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AL591704.2-201ENST00000421658 181 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 SNRPFP2-201ENST00000440710 251 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 Y_RNA.644-201ENST00000459006 113 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 HMGB3P17-201ENST00000504195 649 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 RNA5SP468-201ENST00000516782 93 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC0.6□□□□□ -2.31
COL7A1Q02388 AC008676.3-201ENST00000521237 435 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AC024595.1-201ENST00000623088 387 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 ZNF519P1-201ENST00000449011 1626 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AC009902.3-201ENST00000606235 2172 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.6□□□□□ -2.31
COL7A1Q02388 RNU6-50P-201ENST00000362356 103 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 RNU4ATAC16P-201ENST00000408512 126 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.6□□□□□ -2.31
COL7A1Q02388 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 RPS29P28-201ENST00000446439 141 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 MTND4LP3-201ENST00000468320 276 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
COL7A1Q02388 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC0.6□□□□□ -2.31
COL7A1Q02388 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC0.6□□□□□ -2.31
COL7A1Q02388 NBEAP1-201ENST00000554452 979 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AC022662.1-201ENST00000580252 331 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.6□□□□□ -2.31
COL7A1Q02388 UBE2L4-201ENST00000587688 464 ntBASIC0.6□□□□□ -2.31
COL7A1Q02388 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC0.6□□□□□ -2.31
COL7A1Q02388 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
COL7A1Q02388 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.59□□□□□ -2.31
COL7A1Q02388 SNORA62.1-201ENST00000364287 154 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 MTATP6P4-201ENST00000427725 675 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.59□□□□□ -2.31
COL7A1Q02388 SNRPGP12-201ENST00000449481 213 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 AC008379.1-201ENST00000463655 464 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 AC105252.1-201ENST00000503089 286 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 AC100821.1-201ENST00000523153 2479 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 AC079148.1-201ENST00000565944 819 ntBASIC0.59□□□□□ -2.31
COL7A1Q02388 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.59□□□□□ -2.31
COL7A1Q02388 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.59□□□□□ -2.32
COL7A1Q02388 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
COL7A1Q02388 SNORD114-15-201ENST00000364687 72 ntBASIC0.59□□□□□ -2.32
COL7A1Q02388 MIR92A2-201ENST00000385299 75 ntBASIC0.59□□□□□ -2.32
COL7A1Q02388 HMGB1P9-201ENST00000429856 646 ntBASIC0.59□□□□□ -2.32
COL7A1Q02388 NAP1L1P3-201ENST00000462291 880 ntBASIC0.59□□□□□ -2.32
COL7A1Q02388 SNORA31.20-201ENST00000517111 133 ntBASIC0.59□□□□□ -2.32
COL7A1Q02388 MIR4802-201ENST00000581881 80 ntBASIC0.59□□□□□ -2.32
COL7A1Q02388 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
COL7A1Q02388 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
COL7A1Q02388 SNORA51.2-201ENST00000364595 132 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 MIR329-1-201ENST00000385028 80 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 TRGV6-201ENST00000417928 299 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AC005908.1-201ENST00000468701 347 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 KLRA1P-201ENST00000503499 986 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 BTF3P12-201ENST00000519620 469 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AC133485.1-201ENST00000567176 124 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC138907.6-201ENST00000568401 126 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 SNORD84-203ENST00000584275 78 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC103810.9-201ENST00000606688 112 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC109809.1-201ENST00000619665 545 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC073592.7-201ENST00000623659 507 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 RNU6-1180P-201ENST00000364935 107 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 MIR1207-201ENST00000408249 87 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 NUP35P2-201ENST00000416748 943 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 MED14P1-201ENST00000430517 648 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AL031663.1-201ENST00000437445 219 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
COL7A1Q02388 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
COL7A1Q02388 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AC009220.3-201ENST00000604318 586 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 SNORA23-201ENST00000365128 182 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 SNORD56-201ENST00000413522 71 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC004022.2-201ENST00000413824 193 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 UBE2V1P9-201ENST00000414760 368 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 AL161651.1-201ENST00000440882 223 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 HMGN2P10-201ENST00000448085 265 ntBASIC0.58□□□□□ -2.32
COL7A1Q02388 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC0.58□□□□□ -2.32
COL7A1Q02388 Y_RNA.757-201ENST00000578934 114 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms