Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A3Q01955 GABPAP-201ENST00000419271 1356 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 SNORD9-201ENST00000362566 104 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 Y_RNA.47-201ENST00000362697 108 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-601P-201ENST00000384540 107 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-754P-201ENST00000391166 107 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 MIR1251-201ENST00000408552 70 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.87□□□□□ -1.79
COL4A3Q01955 AC018865.2-201ENST00000423631 129 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A3Q01955 CYCSP4-201ENST00000429682 331 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 CBX3P6-201ENST00000430257 527 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A3Q01955 CYCSP35-201ENST00000451978 304 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RPL5P30-201ENST00000465511 891 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-798P-201ENST00000516912 103 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 HMGN1P28-201ENST00000521340 364 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC135001.1-201ENST00000544546 283 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A3Q01955 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A3Q01955 MIR4680-201ENST00000580906 66 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 MIR5583-1-201ENST00000580941 59 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A3Q01955 AC025588.3-201ENST00000604182 274 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A3Q01955 AL442128.2-201ENST00000620246 1824 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
COL4A3Q01955 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A3Q01955 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
COL4A3Q01955 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.86□□□□□ -1.79
COL4A3Q01955 RNU6-310P-201ENST00000384655 107 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL4A3Q01955 MIR1302-3-201ENST00000408128 138 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.86□□□□□ -1.79
COL4A3Q01955 AC009302.1-201ENST00000417147 390 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 ATG3P1-201ENST00000419507 911 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A3Q01955 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A3Q01955 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A3Q01955 AC135721.1-201ENST00000497954 479 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 AC097473.1-201ENST00000508142 408 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A3Q01955 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A3Q01955 AC103705.1-201ENST00000619013 241 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A3Q01955 Z69720.2-201ENST00000624755 279 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 AC091925.2-201ENST00000625059 256 ntBASIC3.86□□□□□ -1.79
COL4A3Q01955 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
COL4A3Q01955 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
COL4A3Q01955 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A3Q01955 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL4A3Q01955 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 ZNF33CP-201ENST00000432492 2030 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
COL4A3Q01955 TPTE2P4-201ENST00000258589 1605 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.85□□□□□ -1.79
COL4A3Q01955 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 Y_RNA.148-201ENST00000363557 117 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU6-505P-201ENST00000384427 107 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 MIR93-201ENST00000385024 80 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AL360182.1-201ENST00000397433 468 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU2-47P-201ENST00000410649 186 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU4-46P-201ENST00000410818 138 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU6-387P-201ENST00000411331 105 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 MCFD2P1-201ENST00000417812 300 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AC114482.1-201ENST00000418010 247 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RAC1P6-201ENST00000423911 575 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.85□□□□□ -1.79
COL4A3Q01955 SNAP23P1-201ENST00000433229 246 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AC005094.1-201ENST00000440420 368 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A3Q01955 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.85□□□□□ -1.79
COL4A3Q01955 MTND1P17-201ENST00000448961 204 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RN7SL585P-201ENST00000470538 280 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU6-189P-201ENST00000516120 101 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU6-27P-201ENST00000516146 107 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNA5SP154-201ENST00000516193 111 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RNU6-1092P-201ENST00000516955 87 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.85□□□□□ -1.79
COL4A3Q01955 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.85□□□□□ -1.79
COL4A3Q01955 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A3Q01955 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A3Q01955 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A3Q01955 MIR3941-201ENST00000582572 103 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 AL008729.2-201ENST00000606393 473 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 ATP5A1P2-202ENST00000616464 443 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms