Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL022722.2-201ENST00000402519 180 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AL121834.1-202ENST00000404494 277 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 RPL21P65-201ENST00000406094 466 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 HSPE1P12-201ENST00000412576 301 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AC080125.1-201ENST00000414888 684 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 RPL31P12-201ENST00000422587 358 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 RBMY1KP-201ENST00000423480 476 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 GPM6BP2-201ENST00000432046 144 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXA4Q00056 RPL23AP46-201ENST00000438548 490 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 GPM6BP1-201ENST00000446387 144 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 MTCO3P10-201ENST00000455912 772 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 RPL30P15-201ENST00000457129 321 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 RNA5SP246-201ENST00000458909 119 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA4Q00056 RNU7-143P-201ENST00000516781 65 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXA4Q00056 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA4Q00056 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 AC022968.1-201ENST00000567372 442 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.44□□□□□ -1.86
HOXA4Q00056 MIR5684-201ENST00000585074 65 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXA4Q00056 AC073539.2-201ENST00000597113 165 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AC034102.8-201ENST00000615146 484 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 ZYXP1-201ENST00000617638 118 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXA4Q00056 AC244517.12-201ENST00000623581 663 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 BMS1P21-201ENST00000634565 365 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
HOXA4Q00056 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXA4Q00056 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 AC007823.1-201ENST00000569932 1566 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 MAPK10-253ENST00000641010 4072 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HOXA4Q00056 UBE2L2-201ENST00000254302 429 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 SPRR2C-201ENST00000290702 219 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC138393.1-203ENST00000327086 343 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 MIR448-201ENST00000362131 111 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 Y_RNA.146-201ENST00000363549 102 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 Y_RNA.197-201ENST00000364004 102 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 RNU6-173P-201ENST00000364215 104 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 RNU6-512P-201ENST00000364438 103 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
HOXA4Q00056 SNORA70C-201ENST00000384538 135 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 RNU6-601P-201ENST00000384540 107 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 MIR578-201ENST00000384828 96 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 LAP3P1-201ENST00000403648 294 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AL513331.1-201ENST00000411908 397 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXA4Q00056 RPL7P37-201ENST00000425095 738 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AL132765.1-201ENST00000434165 553 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 RPL7P28-201ENST00000437739 740 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC069285.2-201ENST00000440210 275 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 RPL7P5-201ENST00000471472 736 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC092451.1-201ENST00000480211 153 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AL163540.1-201ENST00000485382 386 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC090096.1-201ENST00000489168 390 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA4Q00056 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 RNU6-927P-201ENST00000516199 100 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 RNU6-1045P-201ENST00000516321 107 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 RNA5SP471-201ENST00000516971 106 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 Y_RNA.711-201ENST00000516993 102 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 IGKV2D-23-201ENST00000518179 286 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA4Q00056 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 CYCSP27-201ENST00000527643 293 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 SNRPGP16-201ENST00000533275 226 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA4Q00056 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 MIR5690-201ENST00000583739 73 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA4Q00056 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 AL162730.1-201ENST00000605734 292 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC002044.1-201ENST00000606707 158 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AC116312.1-201ENST00000606841 314 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 MIR6868-201ENST00000611215 58 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 AL731566.2-201ENST00000618971 317 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms