Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
HTTP42858 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.69□□□□□ -2.3
HTTP42858 AC091932.3-201ENST00000624223 323 ntBASIC0.69□□□□□ -2.3
HTTP42858 AC080100.1-201ENST00000624239 5356 ntBASIC0.69□□□□□ -2.3
HTTP42858 ZNF33CP-201ENST00000432492 2030 ntBASIC0.69□□□□□ -2.3
HTTP42858 U8.3-201ENST00000363321 132 ntBASIC0.69□□□□□ -2.3
HTTP42858 RNA5SP299-201ENST00000391203 116 ntBASIC0.69□□□□□ -2.3
HTTP42858 MTND3P24-201ENST00000506306 329 ntBASIC0.69□□□□□ -2.3
HTTP42858 OR5B19P-201ENST00000531766 928 ntBASIC0.69□□□□□ -2.3
HTTP42858 Y_RNA.610-201ENST00000410681 103 ntBASIC0.68□□□□□ -2.3
HTTP42858 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 CCNB1IP1P3-201ENST00000454702 829 ntBASIC0.68□□□□□ -2.3
HTTP42858 AC135999.1-201ENST00000478962 479 ntBASIC0.68□□□□□ -2.3
HTTP42858 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 AC079597.1-201ENST00000624306 508 ntBASIC0.68□□□□□ -2.3
HTTP42858 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.68□□□□□ -2.3
HTTP42858 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 AC105252.1-201ENST00000503089 286 ntBASIC0.68□□□□□ -2.3
HTTP42858 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC0.68□□□□□ -2.3
HTTP42858 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 AC084757.1-201ENST00000559987 490 ntBASIC0.68□□□□□ -2.3
HTTP42858 MTCO3P24-201ENST00000572729 782 ntBASIC0.68□□□□□ -2.3
HTTP42858 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.68□□□□□ -2.3
HTTP42858 CYP2C61P-201ENST00000604072 290 ntBASIC0.68□□□□□ -2.3
HTTP42858 AC099654.7-201ENST00000635788 2127 ntBASIC0.68□□□□□ -2.3
HTTP42858 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HTTP42858 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
HTTP42858 IGLVI-20-201ENST00000519296 130 ntBASIC0.67□□□□□ -2.3
HTTP42858 AP003327.1-201ENST00000529684 127 ntBASIC0.67□□□□□ -2.3
HTTP42858 AC010620.1-201ENST00000601088 1102 ntBASIC0.67□□□□□ -2.3
HTTP42858 AC243829.3-201ENST00000622177 108 ntBASIC0.67□□□□□ -2.3
HTTP42858 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HTTP42858 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HTTP42858 MTND4LP12-201ENST00000448237 295 ntBASIC0.67□□□□□ -2.3
HTTP42858 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC0.67□□□□□ -2.3
HTTP42858 AC098591.2-201ENST00000510152 315 ntBASIC0.67□□□□□ -2.3
HTTP42858 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC0.67□□□□□ -2.3
HTTP42858 MIR5194-201ENST00000582634 120 ntBASIC0.67□□□□□ -2.3
HTTP42858 AL136520.1-201ENST00000600311 1322 ntBASIC0.67□□□□□ -2.3
HTTP42858 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.67□□□□□ -2.3
HTTP42858 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC0.67□□□□□ -2.3
HTTP42858 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.67□□□□□ -2.3
HTTP42858 MIR4512-201ENST00000583257 77 ntBASIC0.67□□□□□ -2.3
HTTP42858 AC084373.1-201ENST00000603311 235 ntBASIC0.67□□□□□ -2.3
HTTP42858 AC073055.1-201ENST00000456901 1621 ntBASIC0.66□□□□□ -2.3
HTTP42858 Y_RNA.572-201ENST00000384757 98 ntBASIC0.66□□□□□ -2.3
HTTP42858 AC068050.1-201ENST00000394891 380 ntBASIC0.66□□□□□ -2.3
HTTP42858 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
HTTP42858 AC060773.1-201ENST00000421698 310 ntBASIC0.66□□□□□ -2.3
HTTP42858 AC091965.2-201ENST00000512324 613 ntBASIC0.66□□□□□ -2.3
HTTP42858 RNU6-1334P-201ENST00000516032 105 ntBASIC0.66□□□□□ -2.3
HTTP42858 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.66□□□□□ -2.3
HTTP42858 MIR6718-201ENST00000616153 80 ntBASIC0.66□□□□□ -2.3
HTTP42858 AC006001.4-201ENST00000622243 395 ntBASIC0.66□□□□□ -2.3
HTTP42858 AC073592.7-201ENST00000623659 507 ntBASIC0.66□□□□□ -2.3
HTTP42858 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC0.66□□□□□ -2.3
HTTP42858 SNORD56-201ENST00000413522 71 ntBASIC0.66□□□□□ -2.3
HTTP42858 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.66□□□□□ -2.3
HTTP42858 HMGB3P3-201ENST00000510526 400 ntBASIC0.66□□□□□ -2.3
HTTP42858 MRPS17P9-201ENST00000511924 393 ntBASIC0.66□□□□□ -2.3
HTTP42858 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC0.66□□□□□ -2.3
HTTP42858 AC023932.2-201ENST00000603176 175 ntBASIC0.66□□□□□ -2.3
HTTP42858 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.66□□□□□ -2.3
HTTP42858 AC068831.7-201ENST00000616954 363 ntBASIC0.66□□□□□ -2.3
HTTP42858 MIR17-201ENST00000385012 84 ntBASIC0.65□□□□□ -2.3
HTTP42858 AL355497.1-201ENST00000406262 551 ntBASIC0.65□□□□□ -2.3
HTTP42858 AP000567.1-201ENST00000406413 156 ntBASIC0.65□□□□□ -2.3
HTTP42858 PTGES3P2-201ENST00000407942 482 ntBASIC0.65□□□□□ -2.3
HTTP42858 AC091435.1-201ENST00000505442 584 ntBASIC0.65□□□□□ -2.3
HTTP42858 RNU6-758P-201ENST00000516292 89 ntBASIC0.65□□□□□ -2.3
HTTP42858 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.65□□□□□ -2.3
HTTP42858 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
HTTP42858 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.65□□□□□ -2.31
HTTP42858 MTND2P2-201ENST00000434633 945 ntBASIC0.65□□□□□ -2.31
HTTP42858 PTENP1-201ENST00000447117 1215 ntBASIC0.65□□□□□ -2.31
HTTP42858 MIR6866-201ENST00000638146 69 ntBASIC0.65□□□□□ -2.31
HTTP42858 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
HTTP42858 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
HTTP42858 RPS24P6-201ENST00000452670 400 ntBASIC0.64□□□□□ -2.31
HTTP42858 C1DP3-201ENST00000455013 423 ntBASIC0.64□□□□□ -2.31
HTTP42858 SUB1P1-201ENST00000524415 382 ntBASIC0.64□□□□□ -2.31
HTTP42858 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC0.64□□□□□ -2.31
HTTP42858 AL139344.1-201ENST00000605228 195 ntBASIC0.64□□□□□ -2.31
HTTP42858 AC106028.5-201ENST00000610332 395 ntBASIC0.64□□□□□ -2.31
HTTP42858 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
HTTP42858 AC009812.4-201ENST00000569134 1805 ntBASIC0.64□□□□□ -2.31
HTTP42858 AL591043.1-201ENST00000432461 424 ntBASIC0.64□□□□□ -2.31
HTTP42858 AL161788.1-201ENST00000441805 169 ntBASIC0.64□□□□□ -2.31
HTTP42858 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.64□□□□□ -2.31
HTTP42858 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC0.64□□□□□ -2.31
HTTP42858 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.64□□□□□ -2.31
HTTP42858 ZNF736P3Y-201ENST00000428264 1465 ntBASIC0.64□□□□□ -2.31
HTTP42858 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms