Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 COX6CP3-201ENST00000580869 223 ntBASIC1.46□□□□□ -2.18
CUX1P39880 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.46□□□□□ -2.18
CUX1P39880 MIR8087-201ENST00000612745 78 ntBASIC1.46□□□□□ -2.18
CUX1P39880 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.46□□□□□ -2.18
CUX1P39880 MIR150-201ENST00000385048 84 ntBASIC1.45□□□□□ -2.18
CUX1P39880 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.45□□□□□ -2.18
CUX1P39880 UBE2D3P2-201ENST00000424409 445 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AC010099.1-201ENST00000455434 375 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.45□□□□□ -2.18
CUX1P39880 RNU7-26P-201ENST00000458980 63 ntBASIC1.45□□□□□ -2.18
CUX1P39880 RNU7-27P-201ENST00000459281 62 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AC005908.1-201ENST00000468701 347 ntBASIC1.45□□□□□ -2.18
CUX1P39880 BTF3P12-201ENST00000519620 469 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.45□□□□□ -2.18
CUX1P39880 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.45□□□□□ -2.18
CUX1P39880 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC1.45□□□□□ -2.18
CUX1P39880 AC004908.2-201ENST00000609090 574 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AL627230.6-201ENST00000611129 280 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.45□□□□□ -2.18
CUX1P39880 MIR6513-201ENST00000621188 64 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.45□□□□□ -2.18
CUX1P39880 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.45□□□□□ -2.18
CUX1P39880 OR51AB1P-201ENST00000429046 620 ntBASIC1.45□□□□□ -2.18
CUX1P39880 TPMTP4-201ENST00000450749 678 ntBASIC1.45□□□□□ -2.18
CUX1P39880 AC015908.1-201ENST00000478739 476 ntBASIC1.45□□□□□ -2.18
CUX1P39880 RPS27AP10-201ENST00000496103 208 ntBASIC1.45□□□□□ -2.18
CUX1P39880 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CUX1P39880 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
CUX1P39880 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.44□□□□□ -2.18
CUX1P39880 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC1.44□□□□□ -2.18
CUX1P39880 RNA5SP252-201ENST00000391131 119 ntBASIC1.44□□□□□ -2.18
CUX1P39880 CIR1P3-201ENST00000405137 479 ntBASIC1.44□□□□□ -2.18
CUX1P39880 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.44□□□□□ -2.18
CUX1P39880 AC018630.2-202ENST00000422992 927 ntBASIC1.44□□□□□ -2.18
CUX1P39880 AC023347.2-201ENST00000433994 462 ntBASIC1.44□□□□□ -2.18
CUX1P39880 PMCHL2-203ENST00000457791 237 ntBASIC1.44□□□□□ -2.18
CUX1P39880 DYNLL1P5-201ENST00000467158 270 ntBASIC1.44□□□□□ -2.18
CUX1P39880 AC022447.3-201ENST00000506865 495 ntBASIC1.44□□□□□ -2.18
CUX1P39880 AC103833.1-201ENST00000517442 172 ntBASIC1.44□□□□□ -2.18
CUX1P39880 AP004371.1-201ENST00000525240 214 ntBASIC1.44□□□□□ -2.18
CUX1P39880 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.44□□□□□ -2.18
CUX1P39880 AC091925.1-201ENST00000623204 462 ntBASIC1.44□□□□□ -2.18
CUX1P39880 AC009812.4-201ENST00000569134 1805 ntBASIC1.44□□□□□ -2.18
CUX1P39880 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CUX1P39880 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.43□□□□□ -2.18
CUX1P39880 RNA5SP391-201ENST00000363456 119 ntBASIC1.43□□□□□ -2.18
CUX1P39880 MIR320B1-201ENST00000390209 79 ntBASIC1.43□□□□□ -2.18
CUX1P39880 AL500527.1-201ENST00000448532 255 ntBASIC1.43□□□□□ -2.18
CUX1P39880 RPL31P20-201ENST00000449593 360 ntBASIC1.43□□□□□ -2.18
CUX1P39880 LARP7P4-201ENST00000481075 878 ntBASIC1.43□□□□□ -2.18
CUX1P39880 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.43□□□□□ -2.18
CUX1P39880 HMGB1P22-201ENST00000505315 124 ntBASIC1.43□□□□□ -2.18
CUX1P39880 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.43□□□□□ -2.18
CUX1P39880 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.43□□□□□ -2.18
CUX1P39880 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.43□□□□□ -2.18
CUX1P39880 HMGB1P24-202ENST00000615653 685 ntBASIC1.43□□□□□ -2.18
CUX1P39880 AL138880.2-201ENST00000616214 239 ntBASIC1.43□□□□□ -2.18
CUX1P39880 MTND5P9-201ENST00000503854 1755 ntBASIC1.43□□□□□ -2.18
CUX1P39880 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.43□□□□□ -2.18
CUX1P39880 AC025263.3-201ENST00000622965 1396 ntBASIC1.43□□□□□ -2.18
CUX1P39880 RNU4-42P-201ENST00000364738 142 ntBASIC1.42□□□□□ -2.18
CUX1P39880 RNU6-532P-201ENST00000384318 107 ntBASIC1.42□□□□□ -2.18
CUX1P39880 TATDN1P1-201ENST00000414123 891 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.42□□□□□ -2.18
CUX1P39880 AC079780.1-201ENST00000428259 207 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AC234064.1-201ENST00000436312 247 ntBASIC1.42□□□□□ -2.18
CUX1P39880 HSPE1P24-201ENST00000450782 238 ntBASIC1.42□□□□□ -2.18
CUX1P39880 RPS24P6-201ENST00000452670 400 ntBASIC1.42□□□□□ -2.18
CUX1P39880 CABYRP1-201ENST00000465493 1045 ntBASIC1.42□□□□□ -2.18
CUX1P39880 KATNBL1P4-201ENST00000503545 918 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AC004062.1-201ENST00000509926 645 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AL160236.1-201ENST00000556317 195 ntBASIC1.42□□□□□ -2.18
CUX1P39880 MIR3117-201ENST00000584034 78 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AL161423.1-201ENST00000613700 262 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AP001486.3-201ENST00000615334 372 ntBASIC1.42□□□□□ -2.18
CUX1P39880 MIR6076-201ENST00000617521 113 ntBASIC1.42□□□□□ -2.18
CUX1P39880 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC1.42□□□□□ -2.18
CUX1P39880 AC110079.1-202ENST00000635213 138 ntBASIC1.42□□□□□ -2.18
CUX1P39880 AC009541.1-201ENST00000438279 2662 ntBASIC1.41□□□□□ -2.18
CUX1P39880 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
CUX1P39880 SNORA3A-201ENST00000364113 130 ntBASIC1.41□□□□□ -2.18
CUX1P39880 RNU6-198P-201ENST00000384258 104 ntBASIC1.41□□□□□ -2.18
CUX1P39880 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.41□□□□□ -2.18
CUX1P39880 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CUX1P39880 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.41□□□□□ -2.18
CUX1P39880 AC108120.2-201ENST00000512973 294 ntBASIC1.41□□□□□ -2.18
CUX1P39880 OR10V3P-201ENST00000525712 725 ntBASIC1.41□□□□□ -2.18
CUX1P39880 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.41□□□□□ -2.18
CUX1P39880 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.41□□□□□ -2.18
CUX1P39880 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.41□□□□□ -2.18
CUX1P39880 AC005498.1-201ENST00000592125 465 ntBASIC1.41□□□□□ -2.18
CUX1P39880 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
CUX1P39880 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.41□□□□□ -2.18
CUX1P39880 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.41□□□□□ -2.18
CUX1P39880 RNU6-670P-201ENST00000364312 104 ntBASIC1.4□□□□□ -2.18
CUX1P39880 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
CUX1P39880 HNRNPDP2-201ENST00000406475 478 ntBASIC1.4□□□□□ -2.18
CUX1P39880 AL031663.1-201ENST00000437445 219 ntBASIC1.4□□□□□ -2.18
CUX1P39880 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.4□□□□□ -2.18
CUX1P39880 JTBP1-201ENST00000441314 247 ntBASIC1.4□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms