Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.54□□□□□ -2
SDC1P18827 AL031775.1-201ENST00000607014 887 ntBASIC2.54□□□□□ -2
SDC1P18827 uc_338.12-201ENST00000616344 181 ntBASIC2.54□□□□□ -2
SDC1P18827 AC092140.2-201ENST00000618027 521 ntBASIC2.54□□□□□ -2
SDC1P18827 AC073308.1-201ENST00000623696 305 ntBASIC2.54□□□□□ -2
SDC1P18827 AC091953.2-201ENST00000623979 160 ntBASIC2.54□□□□□ -2
SDC1P18827 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.54□□□□□ -2
SDC1P18827 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
SDC1P18827 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SDC1P18827 AC091564.4-201ENST00000533934 2194 ntBASIC2.54□□□□□ -2
SDC1P18827 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.54□□□□□ -2
SDC1P18827 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.53□□□□□ -2
SDC1P18827 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.53□□□□□ -2
SDC1P18827 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.53□□□□□ -2
SDC1P18827 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.53□□□□□ -2
SDC1P18827 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
SDC1P18827 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SDC1P18827 RNU6-799P-201ENST00000363567 107 ntBASIC2.53□□□□□ -2
SDC1P18827 RNU6-1284P-201ENST00000363701 100 ntBASIC2.53□□□□□ -2
SDC1P18827 RNU5E-5P-201ENST00000365379 116 ntBASIC2.53□□□□□ -2
SDC1P18827 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
SDC1P18827 AF228730.1-201ENST00000397972 663 ntBASIC2.53□□□□□ -2
SDC1P18827 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.53□□□□□ -2
SDC1P18827 ELOCP17-201ENST00000414751 326 ntBASIC2.53□□□□□ -2
SDC1P18827 ATG3P1-201ENST00000419507 911 ntBASIC2.53□□□□□ -2
SDC1P18827 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.53□□□□□ -2
SDC1P18827 AL356583.2-201ENST00000426536 280 ntBASIC2.53□□□□□ -2
SDC1P18827 AL451062.2-201ENST00000427515 271 ntBASIC2.53□□□□□ -2
SDC1P18827 MED14P1-201ENST00000430517 648 ntBASIC2.53□□□□□ -2
SDC1P18827 CETN4P-201ENST00000432407 469 ntBASIC2.53□□□□□ -2
SDC1P18827 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.53□□□□□ -2
SDC1P18827 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.53□□□□□ -2
SDC1P18827 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.53□□□□□ -2
SDC1P18827 RN7SKP258-201ENST00000517151 304 ntBASIC2.53□□□□□ -2
SDC1P18827 RNA5SP291-201ENST00000517222 105 ntBASIC2.53□□□□□ -2
SDC1P18827 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.53□□□□□ -2
SDC1P18827 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.53□□□□□ -2
SDC1P18827 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.53□□□□□ -2
SDC1P18827 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.53□□□□□ -2
SDC1P18827 MIR548AB-201ENST00000584917 84 ntBASIC2.53□□□□□ -2
SDC1P18827 BNIP3P33-201ENST00000598912 569 ntBASIC2.53□□□□□ -2
SDC1P18827 AC012065.4-201ENST00000602445 679 ntBASIC2.53□□□□□ -2
SDC1P18827 AC136601.2-201ENST00000604356 474 ntBASIC2.53□□□□□ -2
SDC1P18827 AC138749.5-201ENST00000611461 208 ntBASIC2.53□□□□□ -2
SDC1P18827 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SDC1P18827 AC116165.2-201ENST00000616705 206 ntBASIC2.53□□□□□ -2
SDC1P18827 AC097520.1-201ENST00000624435 385 ntBASIC2.53□□□□□ -2
SDC1P18827 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.53□□□□□ -2
SDC1P18827 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.53□□□□□ -2
SDC1P18827 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.53□□□□□ -2
SDC1P18827 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SDC1P18827 AC092104.1-201ENST00000497346 1441 ntBASIC2.52□□□□□ -2.01
SDC1P18827 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.52□□□□□ -2.01
SDC1P18827 FTLP6-201ENST00000355274 422 ntBASIC2.52□□□□□ -2.01
SDC1P18827 MIR208A-201ENST00000362287 71 ntBASIC2.52□□□□□ -2.01
SDC1P18827 RNU6-1027P-201ENST00000383998 107 ntBASIC2.52□□□□□ -2.01
SDC1P18827 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
SDC1P18827 RNA5SP210-201ENST00000391034 120 ntBASIC2.52□□□□□ -2.01
SDC1P18827 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.52□□□□□ -2.01
SDC1P18827 RPL17P12-201ENST00000413391 526 ntBASIC2.52□□□□□ -2.01
SDC1P18827 AL714022.1-201ENST00000439897 151 ntBASIC2.52□□□□□ -2.01
SDC1P18827 UBE2D3P4-201ENST00000441973 436 ntBASIC2.52□□□□□ -2.01
SDC1P18827 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.52□□□□□ -2.01
SDC1P18827 AC116337.2-201ENST00000477662 156 ntBASIC2.52□□□□□ -2.01
SDC1P18827 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.52□□□□□ -2.01
SDC1P18827 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.52□□□□□ -2.01
SDC1P18827 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.52□□□□□ -2.01
SDC1P18827 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.52□□□□□ -2.01
SDC1P18827 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.52□□□□□ -2.01
SDC1P18827 ARL2BPP2-201ENST00000550907 489 ntBASIC2.52□□□□□ -2.01
SDC1P18827 MRPS36P5-201ENST00000551909 298 ntBASIC2.52□□□□□ -2.01
SDC1P18827 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.52□□□□□ -2.01
SDC1P18827 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.52□□□□□ -2.01
SDC1P18827 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.52□□□□□ -2.01
SDC1P18827 AL161729.4-201ENST00000604650 476 ntBASIC2.52□□□□□ -2.01
SDC1P18827 AC121334.2-201ENST00000605387 271 ntBASIC2.52□□□□□ -2.01
SDC1P18827 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
SDC1P18827 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.52□□□□□ -2.01
SDC1P18827 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
SDC1P18827 AC022336.2-201ENST00000568966 2538 ntBASIC2.51□□□□□ -2.01
SDC1P18827 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.51□□□□□ -2.01
SDC1P18827 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SDC1P18827 RNU4-21P-201ENST00000362802 126 ntBASIC2.51□□□□□ -2.01
SDC1P18827 VTRNA1-1-201ENST00000363120 99 ntBASIC2.51□□□□□ -2.01
SDC1P18827 RNU6-511P-201ENST00000363496 107 ntBASIC2.51□□□□□ -2.01
SDC1P18827 RNU6-140P-201ENST00000384566 108 ntBASIC2.51□□□□□ -2.01
SDC1P18827 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
SDC1P18827 AL356057.3-201ENST00000402607 340 ntBASIC2.51□□□□□ -2.01
SDC1P18827 NDUFS5P1-201ENST00000405668 289 ntBASIC2.51□□□□□ -2.01
SDC1P18827 BTF3L4P3-201ENST00000418879 476 ntBASIC2.51□□□□□ -2.01
SDC1P18827 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.51□□□□□ -2.01
SDC1P18827 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.51□□□□□ -2.01
SDC1P18827 ZNF863P-201ENST00000426746 417 ntBASIC2.51□□□□□ -2.01
SDC1P18827 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.51□□□□□ -2.01
SDC1P18827 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.51□□□□□ -2.01
SDC1P18827 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.51□□□□□ -2.01
SDC1P18827 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.51□□□□□ -2.01
SDC1P18827 RPS24P13-201ENST00000442520 397 ntBASIC2.51□□□□□ -2.01
SDC1P18827 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.51□□□□□ -2.01
SDC1P18827 COX6CP12-201ENST00000446748 202 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms