Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.09□□□□□ -1.91
USP28Q96RU2 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.09□□□□□ -1.91
USP28Q96RU2 AC004492.1-201ENST00000607036 742 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AL355472.4-201ENST00000610233 626 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AC131902.3-201ENST00000611767 581 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AC122108.2-201ENST00000611946 526 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AC008498.1-201ENST00000613012 531 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AC008250.2-201ENST00000615261 205 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 AC090617.7-201ENST00000623952 126 ntBASIC3.09□□□□□ -1.91
USP28Q96RU2 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.09□□□□□ -1.91
USP28Q96RU2 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP28Q96RU2 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP28Q96RU2 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.92
USP28Q96RU2 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AC092447.7-201ENST00000422212 1621 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 FRG1BP-201ENST00000278882 761 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP28Q96RU2 MIR208A-201ENST00000362287 71 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 RNU6-97P-201ENST00000363387 104 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 U8.9-201ENST00000365667 134 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 Y_RNA.505-201ENST00000384489 102 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 RNU6-114P-201ENST00000384704 105 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
USP28Q96RU2 SNORA26.7-201ENST00000391288 122 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AL138827.1-201ENST00000402666 306 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 RNU6-195P-201ENST00000411352 109 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AL359704.1-201ENST00000411586 781 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AL031779.1-201ENST00000415663 330 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AC104332.2-201ENST00000429959 156 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.08□□□□□ -1.92
USP28Q96RU2 RPL21P2-201ENST00000440049 481 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC244505.5-201ENST00000443639 207 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 CACYBPP2-201ENST00000453625 678 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AL590639.1-201ENST00000456484 337 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 KLF3P2-201ENST00000465138 268 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 S100A11P2-201ENST00000467589 312 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 MTND2P33-201ENST00000506452 1031 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 NDUFB4P2-201ENST00000509515 391 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 RNU6-405P-201ENST00000516637 110 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AC022080.3-201ENST00000544433 482 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AL157394.1-201ENST00000562983 1224 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 OR4K8P-201ENST00000578842 1048 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 MIR3944-201ENST00000581277 108 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC060771.1-201ENST00000582031 164 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC068790.6-201ENST00000602558 258 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC068790.2-201ENST00000602601 557 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AC073648.5-201ENST00000603502 305 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.08□□□□□ -1.92
USP28Q96RU2 AL627309.6-201ENST00000606857 840 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AL589743.7-201ENST00000612637 233 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 AL138880.2-201ENST00000616214 239 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.08□□□□□ -1.92
USP28Q96RU2 MTND4P5-201ENST00000435821 1374 ntBASIC3.08□□□□□ -1.92
USP28Q96RU2 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.08□□□□□ -1.92
USP28Q96RU2 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
USP28Q96RU2 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP28Q96RU2 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.07□□□□□ -1.92
USP28Q96RU2 RNU1-140P-201ENST00000365040 165 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.07□□□□□ -1.92
USP28Q96RU2 MIR493-201ENST00000385254 89 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 RPS3AP3-201ENST00000411933 242 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 SAR1AP4-201ENST00000429225 591 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 RPL36AP6-201ENST00000435770 321 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 NANOGNBP1-201ENST00000448444 480 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.07□□□□□ -1.92
USP28Q96RU2 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.07□□□□□ -1.92
USP28Q96RU2 AL031183.1-201ENST00000457667 207 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 RPS29P12-201ENST00000460178 152 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC021382.1-201ENST00000483523 359 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 ARL4AP2-201ENST00000507378 601 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 AC022616.6-201ENST00000520479 119 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 CR383656.7-201ENST00000548164 174 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.07□□□□□ -1.92
USP28Q96RU2 RPL21P5-201ENST00000554662 472 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC009063.1-201ENST00000563342 702 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.07□□□□□ -1.92
USP28Q96RU2 MTCO3P13-201ENST00000577757 781 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.07□□□□□ -1.92
USP28Q96RU2 DUXAP4-201ENST00000603046 613 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC079089.3-201ENST00000603094 673 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC091805.2-201ENST00000603848 235 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 AC008277.2-201ENST00000605196 797 ntBASIC3.07□□□□□ -1.92
USP28Q96RU2 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms