Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 RPL23AP35-201ENST00000451906 501 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC087588.1-201ENST00000462203 316 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 HMGB1P38-201ENST00000490557 577 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 NUTF2P8-201ENST00000604593 363 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC006270.3-201ENST00000605967 1036 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 MIR8087-201ENST00000612745 78 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC008083.4-201ENST00000615076 444 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 RMST_5.1-201ENST00000618704 126 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 SDAD1P2-201ENST00000441308 2028 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 MIR1197-201ENST00000408818 88 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC093716.1-201ENST00000435923 377 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 ATG12P2-201ENST00000456830 416 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC107954.1-201ENST00000565906 727 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC091925.1-201ENST00000623204 462 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 MIR338-201ENST00000636369 67 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC010889.1-201ENST00000566193 2666 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 RNU6-629P-201ENST00000384061 103 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 MIR607-201ENST00000385241 96 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 RPL31P53-201ENST00000457065 348 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 RPL21P103-201ENST00000479921 488 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC067942.3-201ENST00000512025 362 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 RNU11-2P-201ENST00000516898 142 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 AC090897.2-201ENST00000581715 130 ntBASIC0.89□□□□□ -2.27
CHD9Q3L8U1 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC0.89□□□□□ -2.27
CHD9Q3L8U1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 RNU6-263P-201ENST00000363811 107 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 OR1L1-202ENST00000373686 1083 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 RNU4-65P-201ENST00000410473 140 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC233728.2-201ENST00000425348 757 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 TPMTP4-201ENST00000450749 678 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 EEF1B2P4-201ENST00000551398 348 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 MIR4698-201ENST00000577795 80 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 DUXAP11-201ENST00000603858 526 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC113194.1-201ENST00000606037 500 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 MIR6840-201ENST00000611937 71 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC007742.2-201ENST00000618226 398 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC091304.6-201ENST00000619761 202 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 MIR7515-201ENST00000637837 67 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AP000648.3-201ENST00000623539 4507 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 RNU6-16P-201ENST00000384385 107 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC096632.1-201ENST00000427395 310 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AC112503.2-201ENST00000609005 552 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 AP001486.3-201ENST00000615334 372 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 ZNF37BP-203ENST00000452306 1352 ntBASIC0.88□□□□□ -2.27
CHD9Q3L8U1 NACAP2-201ENST00000318548 624 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 RNA5SP499-201ENST00000363982 119 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 TRAPPC2P4-201ENST00000421750 331 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 TMEM167AP1-201ENST00000423409 219 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 ZNF965P-201ENST00000432501 817 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 SSXP4-201ENST00000451349 245 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AL139109.1-201ENST00000455491 297 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 BTF3P12-201ENST00000519620 469 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 FAM157B-203ENST00000639350 358 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 MORF4L1P7-201ENST00000426038 703 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AC012497.1-201ENST00000429392 575 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AL136380.1-201ENST00000447970 162 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 snoU13.7-201ENST00000459220 104 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 RNU2-44P-201ENST00000516795 194 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AC087272.1-201ENST00000523624 533 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AL163153.1-201ENST00000554223 283 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AC104229.1-201ENST00000561364 255 ntBASIC0.87□□□□□ -2.27
CHD9Q3L8U1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC0.87□□□□□ -2.27
CHD9Q3L8U1 MIR4658-201ENST00000584344 65 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms