Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 uc_338.5-201ENST00000611839 155 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 AL445493.3-201ENST00000619568 477 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC1.24□□□□□ -2.21
FOXA3P55318 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.24□□□□□ -2.21
FOXA3P55318 IGHVIII-44-202ENST00000636235 289 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
FOXA3P55318 AL356473.1-201ENST00000406203 1408 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
FOXA3P55318 MIR16-1-201ENST00000385271 89 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 MIR934-201ENST00000401241 83 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AL139098.1-201ENST00000407291 389 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 RNU2-63P-201ENST00000410792 194 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 RPS24P7-201ENST00000416921 246 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 Z98742.3-201ENST00000418637 326 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 PSMA6P3-201ENST00000428242 164 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AL512661.1-201ENST00000434586 1253 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AC092170.1-201ENST00000440211 356 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AL360221.1-201ENST00000445989 335 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.23□□□□□ -2.21
FOXA3P55318 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.23□□□□□ -2.21
FOXA3P55318 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.23□□□□□ -2.21
FOXA3P55318 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
FOXA3P55318 AC008834.1-201ENST00000511612 175 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.23□□□□□ -2.21
FOXA3P55318 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.23□□□□□ -2.21
FOXA3P55318 AC084851.1-201ENST00000529105 249 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AC074050.1-201ENST00000563247 211 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.23□□□□□ -2.21
FOXA3P55318 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC1.23□□□□□ -2.21
FOXA3P55318 AL138963.2-201ENST00000605137 226 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.23□□□□□ -2.21
FOXA3P55318 AC003001.2-201ENST00000616294 831 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AC024581.2-201ENST00000619986 252 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 AC008443.7-201ENST00000622195 246 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 SGO1P1-201ENST00000603525 1447 ntBASIC1.23□□□□□ -2.21
FOXA3P55318 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 ZNF849P-201ENST00000594711 1566 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
FOXA3P55318 RNU4-82P-201ENST00000362443 140 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 RNU6-486P-201ENST00000363116 107 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 RNU6-884P-201ENST00000363889 107 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 U3.13-201ENST00000364804 214 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 OR1L1-202ENST00000373686 1083 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 Y_RNA.510-201ENST00000384511 114 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 RNU6-140P-201ENST00000384566 108 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 RNU6-748P-201ENST00000384648 107 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 CISD1P1-201ENST00000393907 327 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 SNRPEP2-201ENST00000397592 279 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 NDUFS5P1-201ENST00000405668 289 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 RNA5SP425-201ENST00000410336 112 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 RNU2-33P-201ENST00000410344 192 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 OR9R1P-201ENST00000412200 877 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AC007098.1-201ENST00000420122 367 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA3P55318 BPY2DP-201ENST00000422208 265 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 DPH3P2-201ENST00000422618 250 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA3P55318 AC098831.1-201ENST00000440661 216 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.22□□□□□ -2.21
FOXA3P55318 RNU1-98P-201ENST00000458992 160 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC1.22□□□□□ -2.21
FOXA3P55318 AC011352.3-201ENST00000505162 593 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 ANXA2P1-201ENST00000505539 926 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA3P55318 AC093752.1-206ENST00000511823 336 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA3P55318 AP004607.1-201ENST00000524456 203 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AP003066.2-201ENST00000529375 555 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AP002770.2-201ENST00000543613 532 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AL512310.1-201ENST00000548639 172 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AL132857.1-201ENST00000555180 708 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.22□□□□□ -2.21
FOXA3P55318 MIR4765-201ENST00000585007 77 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.22□□□□□ -2.21
FOXA3P55318 LINC02211-204ENST00000642024 1070 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.22□□□□□ -2.21
FOXA3P55318 AC110491.1-201ENST00000562191 2010 ntBASIC1.22□□□□□ -2.21
FOXA3P55318 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA3P55318 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
FOXA3P55318 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
FOXA3P55318 RNU1-72P-201ENST00000362976 153 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 SNORA8-201ENST00000384574 139 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 TMSB4XP8-201ENST00000402089 135 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA3P55318 AL445183.3-201ENST00000414168 502 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 TMSB4XP6-201ENST00000415187 135 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 TMSB4XP1-201ENST00000424567 135 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AL121578.1-201ENST00000428051 892 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
FOXA3P55318 RPL7P54-201ENST00000438336 674 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 AC009238.1-201ENST00000442165 424 ntBASIC1.21□□□□□ -2.22
FOXA3P55318 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
FOXA3P55318 AC009237.6-201ENST00000446969 424 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms