Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-1167P-201ENST00000363227 94 ntBASIC4.77□□□□□ -1.65
LIG3P49916 Y_RNA.151-201ENST00000363566 112 ntBASIC4.77□□□□□ -1.65
LIG3P49916 RNU6-512P-201ENST00000364438 103 ntBASIC4.77□□□□□ -1.65
LIG3P49916 RNU1-115P-201ENST00000365329 160 ntBASIC4.77□□□□□ -1.65
LIG3P49916 Y_RNA.452-201ENST00000384202 108 ntBASIC4.77□□□□□ -1.65
LIG3P49916 SNORA41-201ENST00000384675 132 ntBASIC4.77□□□□□ -1.65
LIG3P49916 RNU1-82P-201ENST00000390851 165 ntBASIC4.77□□□□□ -1.65
LIG3P49916 MIR1302-3-201ENST00000408128 138 ntBASIC4.77□□□□□ -1.65
LIG3P49916 RN7SKP167-201ENST00000411047 285 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.77□□□□□ -1.65
LIG3P49916 AC016831.4-201ENST00000438302 307 ntBASIC4.77□□□□□ -1.65
LIG3P49916 RPS29P33-201ENST00000456717 146 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.77□□□□□ -1.65
LIG3P49916 MTATP8P1-201ENST00000467115 207 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AC128713.1-201ENST00000471495 306 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.77□□□□□ -1.65
LIG3P49916 AC018437.1-201ENST00000492214 406 ntBASIC4.77□□□□□ -1.65
LIG3P49916 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.77□□□□□ -1.65
LIG3P49916 AC116655.1-201ENST00000508324 901 ntBASIC4.77□□□□□ -1.65
LIG3P49916 IGKV2D-23-201ENST00000518179 286 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AP006289.1-201ENST00000538089 277 ntBASIC4.77□□□□□ -1.65
LIG3P49916 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.77□□□□□ -1.65
LIG3P49916 GNAI2P1-201ENST00000541815 315 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.77□□□□□ -1.65
LIG3P49916 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.77□□□□□ -1.65
LIG3P49916 AL157871.3-201ENST00000557231 293 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.77□□□□□ -1.65
LIG3P49916 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.77□□□□□ -1.65
LIG3P49916 AC109446.1-201ENST00000566172 220 ntBASIC4.77□□□□□ -1.65
LIG3P49916 MIR1273C-201ENST00000578669 77 ntBASIC4.77□□□□□ -1.65
LIG3P49916 7SK.7-201ENST00000603504 247 ntBASIC4.77□□□□□ -1.65
LIG3P49916 AC098826.3-201ENST00000603823 466 ntBASIC4.77□□□□□ -1.65
LIG3P49916 MIR6748-201ENST00000610433 71 ntBASIC4.77□□□□□ -1.65
LIG3P49916 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
LIG3P49916 AL360181.4-201ENST00000621752 134 ntBASIC4.77□□□□□ -1.65
LIG3P49916 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.77□□□□□ -1.65
LIG3P49916 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIG3P49916 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIG3P49916 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
LIG3P49916 AC079741.1-201ENST00000321498 212 ntBASIC4.76□□□□□ -1.65
LIG3P49916 RNU6-395P-201ENST00000365662 106 ntBASIC4.76□□□□□ -1.65
LIG3P49916 Y_RNA.557-201ENST00000384680 107 ntBASIC4.76□□□□□ -1.65
LIG3P49916 MIR568-201ENST00000385036 95 ntBASIC4.76□□□□□ -1.65
LIG3P49916 SNORD73A-201ENST00000386062 65 ntBASIC4.76□□□□□ -1.65
LIG3P49916 AL445529.1-201ENST00000398713 389 ntBASIC4.76□□□□□ -1.65
LIG3P49916 RPS16P5-201ENST00000406501 404 ntBASIC4.76□□□□□ -1.65
LIG3P49916 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.76□□□□□ -1.65
LIG3P49916 RNU2-3P-201ENST00000410144 191 ntBASIC4.76□□□□□ -1.65
LIG3P49916 RNU6-55P-201ENST00000411092 107 ntBASIC4.76□□□□□ -1.65
LIG3P49916 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.76□□□□□ -1.65
LIG3P49916 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.76□□□□□ -1.65
LIG3P49916 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.76□□□□□ -1.65
LIG3P49916 RANP8-201ENST00000444720 713 ntBASIC4.76□□□□□ -1.65
LIG3P49916 PCMTD1P1-201ENST00000455560 355 ntBASIC4.76□□□□□ -1.65
LIG3P49916 AC010326.1-201ENST00000462726 602 ntBASIC4.76□□□□□ -1.65
LIG3P49916 AC010285.1-201ENST00000470580 392 ntBASIC4.76□□□□□ -1.65
LIG3P49916 RPL23AP65-201ENST00000475608 468 ntBASIC4.76□□□□□ -1.65
LIG3P49916 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.76□□□□□ -1.65
LIG3P49916 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.76□□□□□ -1.65
LIG3P49916 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.76□□□□□ -1.65
LIG3P49916 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.76□□□□□ -1.65
LIG3P49916 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.76□□□□□ -1.65
LIG3P49916 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.76□□□□□ -1.65
LIG3P49916 SNRPGP15-201ENST00000600149 222 ntBASIC4.76□□□□□ -1.65
LIG3P49916 RN7SL722P-201ENST00000617780 284 ntBASIC4.76□□□□□ -1.65
LIG3P49916 RN7SL565P-201ENST00000618246 284 ntBASIC4.76□□□□□ -1.65
LIG3P49916 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.76□□□□□ -1.65
LIG3P49916 MIR7703-201ENST00000620784 77 ntBASIC4.76□□□□□ -1.65
LIG3P49916 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.76□□□□□ -1.65
LIG3P49916 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.76□□□□□ -1.65
LIG3P49916 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LIG3P49916 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIG3P49916 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
LIG3P49916 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
LIG3P49916 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.75□□□□□ -1.65
LIG3P49916 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.75□□□□□ -1.65
LIG3P49916 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
LIG3P49916 Y_RNA.324-201ENST00000365165 102 ntBASIC4.75□□□□□ -1.65
LIG3P49916 RNU6-842P-201ENST00000384269 107 ntBASIC4.75□□□□□ -1.65
LIG3P49916 MIR192-201ENST00000384915 110 ntBASIC4.75□□□□□ -1.65
LIG3P49916 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
LIG3P49916 MIR708-201ENST00000390708 88 ntBASIC4.75□□□□□ -1.65
LIG3P49916 RN7SKP106-201ENST00000410832 272 ntBASIC4.75□□□□□ -1.65
LIG3P49916 CYCSP33-201ENST00000414485 327 ntBASIC4.75□□□□□ -1.65
LIG3P49916 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.75□□□□□ -1.65
LIG3P49916 UBE2D3P2-201ENST00000424409 445 ntBASIC4.75□□□□□ -1.65
LIG3P49916 AC096644.2-201ENST00000429278 159 ntBASIC4.75□□□□□ -1.65
LIG3P49916 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 DHFRP3-201ENST00000455595 559 ntBASIC4.75□□□□□ -1.65
LIG3P49916 RPL12P20-201ENST00000475538 479 ntBASIC4.75□□□□□ -1.65
LIG3P49916 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 SCARNA15.2-201ENST00000516409 127 ntBASIC4.75□□□□□ -1.65
LIG3P49916 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.75□□□□□ -1.65
LIG3P49916 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 AC090281.1-201ENST00000523019 276 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms