Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL357094.1-201ENST00000603845 844 ntBASIC2.12□□□□□ -2.07
USF1P22415 AC069431.2-201ENST00000604149 1099 ntBASIC2.12□□□□□ -2.07
USF1P22415 AF129408.1-201ENST00000608767 431 ntBASIC2.12□□□□□ -2.07
USF1P22415 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.12□□□□□ -2.07
USF1P22415 AC107075.1-201ENST00000613695 314 ntBASIC2.12□□□□□ -2.07
USF1P22415 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
USF1P22415 AC099786.3-201ENST00000565735 1410 ntBASIC2.11□□□□□ -2.07
USF1P22415 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
USF1P22415 RNA5SP432-201ENST00000362480 116 ntBASIC2.11□□□□□ -2.07
USF1P22415 Y_RNA.192-201ENST00000363977 102 ntBASIC2.11□□□□□ -2.07
USF1P22415 Y_RNA.465-201ENST00000384293 102 ntBASIC2.11□□□□□ -2.07
USF1P22415 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 RNA5SP181-201ENST00000410246 98 ntBASIC2.11□□□□□ -2.07
USF1P22415 RNA5SP425-201ENST00000410336 112 ntBASIC2.11□□□□□ -2.07
USF1P22415 AC023141.4-201ENST00000412031 328 ntBASIC2.11□□□□□ -2.07
USF1P22415 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 RPS25P9-201ENST00000435591 252 ntBASIC2.11□□□□□ -2.07
USF1P22415 MTCO3P45-201ENST00000443036 613 ntBASIC2.11□□□□□ -2.07
USF1P22415 snoU13.26-201ENST00000459452 105 ntBASIC2.11□□□□□ -2.07
USF1P22415 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
USF1P22415 EIF4EP3-201ENST00000498782 656 ntBASIC2.11□□□□□ -2.07
USF1P22415 AC105252.1-201ENST00000503089 286 ntBASIC2.11□□□□□ -2.07
USF1P22415 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.11□□□□□ -2.07
USF1P22415 AC116353.3-201ENST00000511215 249 ntBASIC2.11□□□□□ -2.07
USF1P22415 AC112206.4-201ENST00000515142 405 ntBASIC2.11□□□□□ -2.07
USF1P22415 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.11□□□□□ -2.07
USF1P22415 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.11□□□□□ -2.07
USF1P22415 AC023538.1-201ENST00000534576 736 ntBASIC2.11□□□□□ -2.07
USF1P22415 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.11□□□□□ -2.07
USF1P22415 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
USF1P22415 AC009063.1-201ENST00000563342 702 ntBASIC2.11□□□□□ -2.07
USF1P22415 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
USF1P22415 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 AP001269.3-201ENST00000588718 329 ntBASIC2.11□□□□□ -2.07
USF1P22415 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.11□□□□□ -2.07
USF1P22415 MIR6895-201ENST00000613497 78 ntBASIC2.11□□□□□ -2.07
USF1P22415 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.11□□□□□ -2.07
USF1P22415 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USF1P22415 Z82209.1-201ENST00000422141 2135 ntBASIC2.11□□□□□ -2.07
USF1P22415 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.1□□□□□ -2.07
USF1P22415 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
USF1P22415 MIR6073-201ENST00000352083 89 ntBASIC2.1□□□□□ -2.07
USF1P22415 RNU6-750P-201ENST00000390946 107 ntBASIC2.1□□□□□ -2.07
USF1P22415 RNA5SP210-201ENST00000391034 120 ntBASIC2.1□□□□□ -2.07
USF1P22415 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC080125.1-201ENST00000414888 684 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.1□□□□□ -2.07
USF1P22415 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC2.1□□□□□ -2.07
USF1P22415 FCF1P1-201ENST00000432690 571 ntBASIC2.1□□□□□ -2.07
USF1P22415 HIGD1AP2-201ENST00000446367 280 ntBASIC2.1□□□□□ -2.07
USF1P22415 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.1□□□□□ -2.07
USF1P22415 AC013267.1-201ENST00000458227 267 ntBASIC2.1□□□□□ -2.07
USF1P22415 RPL23AP45-201ENST00000476406 468 ntBASIC2.1□□□□□ -2.07
USF1P22415 RPS29P20-201ENST00000489592 171 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC034222.1-201ENST00000494052 532 ntBASIC2.1□□□□□ -2.07
USF1P22415 RN7SL636P-201ENST00000497504 294 ntBASIC2.1□□□□□ -2.07
USF1P22415 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.1□□□□□ -2.07
USF1P22415 AC021146.8-201ENST00000507455 733 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.1□□□□□ -2.07
USF1P22415 RNA5SP216-201ENST00000516111 123 ntBASIC2.1□□□□□ -2.07
USF1P22415 SCARNA17.1-201ENST00000516211 143 ntBASIC2.1□□□□□ -2.07
USF1P22415 SCARNA17.2-201ENST00000516334 143 ntBASIC2.1□□□□□ -2.07
USF1P22415 RNA5SP290-201ENST00000517133 127 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.1□□□□□ -2.07
USF1P22415 HMGB1P41-201ENST00000520234 440 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.1□□□□□ -2.07
USF1P22415 AL359212.1-201ENST00000556608 614 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.1□□□□□ -2.07
USF1P22415 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.1□□□□□ -2.07
USF1P22415 MIR5694-201ENST00000581190 76 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC060771.1-201ENST00000582031 164 ntBASIC2.1□□□□□ -2.07
USF1P22415 AL160237.3-201ENST00000604114 1013 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC104763.2-201ENST00000604179 382 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC135507.1-201ENST00000607214 561 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.1□□□□□ -2.07
USF1P22415 AL133445.2-201ENST00000611191 527 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC013562.2-201ENST00000611632 603 ntBASIC2.1□□□□□ -2.07
USF1P22415 SCARNA17.4-201ENST00000614296 143 ntBASIC2.1□□□□□ -2.07
USF1P22415 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.1□□□□□ -2.07
USF1P22415 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.1□□□□□ -2.07
USF1P22415 PCMTD1P7-201ENST00000634506 357 ntBASIC2.1□□□□□ -2.07
USF1P22415 AC099654.8-201ENST00000637757 681 ntBASIC2.1□□□□□ -2.07
USF1P22415 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
USF1P22415 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.1□□□□□ -2.07
USF1P22415 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USF1P22415 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USF1P22415 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.09□□□□□ -2.07
USF1P22415 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USF1P22415 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
USF1P22415 RNA5SP289-201ENST00000362332 137 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms