Protein–RNA interactions for Protein: Q9D883

U2af1, Splicing factor U2AF 35 kDa subunit, mousemouse

Known RBP Predictions only

Length 239 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2af1Q9D883 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
U2af1Q9D883 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC21.34■■□□□ 1.01
U2af1Q9D883 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC21.34■■□□□ 1.01
U2af1Q9D883 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC21.34■■□□□ 1.01
U2af1Q9D883 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
U2af1Q9D883 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
U2af1Q9D883 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
U2af1Q9D883 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
U2af1Q9D883 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC21.33■■□□□ 1.01
U2af1Q9D883 Gm7507-201ENSMUST00000183053 1008 ntBASIC21.33■■□□□ 1.01
U2af1Q9D883 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
U2af1Q9D883 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC21.33■■□□□ 1.01
U2af1Q9D883 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC21.33■■□□□ 1.01
U2af1Q9D883 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
U2af1Q9D883 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
U2af1Q9D883 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
U2af1Q9D883 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
U2af1Q9D883 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
U2af1Q9D883 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 AC132265.1-201ENSMUST00000219233 1665 ntBASIC21.32■■□□□ 1
U2af1Q9D883 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC21.32■■□□□ 1
U2af1Q9D883 Gm12644-201ENSMUST00000119935 606 ntBASIC21.32■■□□□ 1
U2af1Q9D883 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC21.32■■□□□ 1
U2af1Q9D883 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
U2af1Q9D883 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC21.32■■□□□ 1
U2af1Q9D883 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
U2af1Q9D883 Gm6858-201ENSMUST00000208582 1468 ntBASIC21.32■■□□□ 1
U2af1Q9D883 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
U2af1Q9D883 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC21.31■■□□□ 1
U2af1Q9D883 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC21.31■■□□□ 1
U2af1Q9D883 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC21.31■■□□□ 1
U2af1Q9D883 Cmtm5-203ENSMUST00000227441 610 ntBASIC21.31■■□□□ 1
U2af1Q9D883 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
U2af1Q9D883 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
U2af1Q9D883 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC21.3■■□□□ 1
U2af1Q9D883 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC21.3■■□□□ 1
U2af1Q9D883 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Gm27459-201ENSMUST00000184860 107 ntBASIC21.3■■□□□ 1
U2af1Q9D883 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
U2af1Q9D883 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
U2af1Q9D883 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC21.29■■□□□ 1
U2af1Q9D883 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC21.29■■□□□ 1
U2af1Q9D883 Gm1818-201ENSMUST00000169406 1184 ntBASIC21.29■■□□□ 1
U2af1Q9D883 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC21.29■■□□□ 1
U2af1Q9D883 Gm43347-201ENSMUST00000200226 580 ntBASIC21.29■■□□□ 1
U2af1Q9D883 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
U2af1Q9D883 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms