Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm10576-201ENSMUST00000191927 825 ntBASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm44945-201ENSMUST00000206764 1187 ntBASIC17.1■□□□□ 0.33
Clp1Q99LI9 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.1■□□□□ 0.33
Clp1Q99LI9 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Gm15920-201ENSMUST00000118998 402 ntBASIC17.09■□□□□ 0.33
Clp1Q99LI9 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Gm2308-201ENSMUST00000166539 1004 ntBASIC17.09■□□□□ 0.33
Clp1Q99LI9 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clp1Q99LI9 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clp1Q99LI9 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clp1Q99LI9 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clp1Q99LI9 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clp1Q99LI9 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Clp1Q99LI9 AC131709.1-201ENSMUST00000224731 1180 ntBASIC17.08■□□□□ 0.32
Clp1Q99LI9 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Clp1Q99LI9 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm8825-201ENSMUST00000182565 998 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm4518-201ENSMUST00000182638 718 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.07■□□□□ 0.32
Clp1Q99LI9 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.07■□□□□ 0.32
Clp1Q99LI9 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.06■□□□□ 0.32
Clp1Q99LI9 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms