Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Gm45412-201ENSMUST00000210217 2275 ntBASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Brf1Q8CFK2 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Brf1Q8CFK2 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Gm7284-201ENSMUST00000131667 944 ntBASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Gm27704-201ENSMUST00000185094 107 ntBASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Brf1Q8CFK2 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Olfr129-201ENSMUST00000122318 993 ntBASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Brf1Q8CFK2 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Brf1Q8CFK2 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Brf1Q8CFK2 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms