Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 CT010478.1-201ENSMUST00000220747 2787 ntBASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nup88Q8CEC0 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nup88Q8CEC0 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Gm11860-201ENSMUST00000122346 1010 ntBASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Nup88Q8CEC0 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Nup88Q8CEC0 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nup88Q8CEC0 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Gm18669-201ENSMUST00000216049 778 ntBASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nup88Q8CEC0 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Gm27357-201ENSMUST00000183754 135 ntBASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Gm37722-201ENSMUST00000193757 208 ntBASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nup88Q8CEC0 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nup88Q8CEC0 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Nup88Q8CEC0 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms