Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Gm14859-201ENSMUST00000117752 357 ntBASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sh3rf1Q69ZI1 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sh3rf1Q69ZI1 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Sh3rf1Q69ZI1 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms