Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
ShhQ62226 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
ShhQ62226 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC15.13■□□□□ 0.01
ShhQ62226 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.13■□□□□ 0.01
ShhQ62226 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ShhQ62226 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
ShhQ62226 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ShhQ62226 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ShhQ62226 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ShhQ62226 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Gm2213-201ENSMUST00000197485 688 ntBASIC15.12■□□□□ 0.01
ShhQ62226 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC15.12■□□□□ 0.01
ShhQ62226 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.12■□□□□ 0.01
ShhQ62226 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ShhQ62226 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ShhQ62226 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.11■□□□□ 0.01
ShhQ62226 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
ShhQ62226 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC15.11■□□□□ 0.01
ShhQ62226 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.11■□□□□ 0.01
ShhQ62226 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC15.11■□□□□ 0.01
ShhQ62226 Gm9449-201ENSMUST00000207265 1011 ntBASIC15.11■□□□□ 0.01
ShhQ62226 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
ShhQ62226 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ShhQ62226 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.11■□□□□ 0.01
ShhQ62226 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.1■□□□□ 0.01
ShhQ62226 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ShhQ62226 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC15.1■□□□□ 0.01
ShhQ62226 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
ShhQ62226 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC15.1■□□□□ 0.01
ShhQ62226 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC15.1■□□□□ 0.01
ShhQ62226 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC15.1■□□□□ 0.01
ShhQ62226 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.1■□□□□ 0.01
ShhQ62226 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
ShhQ62226 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ShhQ62226 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ShhQ62226 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ShhQ62226 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.09■□□□□ 0.01
ShhQ62226 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
ShhQ62226 Actl10-202ENSMUST00000226583 1501 ntBASIC15.09■□□□□ 0.01
ShhQ62226 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
ShhQ62226 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC15.09■□□□□ 0.01
ShhQ62226 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC15.09■□□□□ 0.01
ShhQ62226 Gm2651-201ENSMUST00000203560 838 ntBASIC15.09■□□□□ 0.01
ShhQ62226 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC15.09■□□□□ 0.01
ShhQ62226 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.09■□□□□ 0.01
ShhQ62226 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
ShhQ62226 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.09■□□□□ 0.01
ShhQ62226 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
ShhQ62226 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
ShhQ62226 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ShhQ62226 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms