Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Gm18489-201ENSMUST00000172565 551 ntBASIC18.1■□□□□ 0.49
Col11a1Q61245 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col11a1Q61245 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC18.1■□□□□ 0.49
Col11a1Q61245 Thap2-203ENSMUST00000218989 527 ntBASIC18.1■□□□□ 0.49
Col11a1Q61245 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Col11a1Q61245 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.1■□□□□ 0.49
Col11a1Q61245 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Col11a1Q61245 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col11a1Q61245 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.1■□□□□ 0.49
Col11a1Q61245 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Fgf17-202ENSMUST00000227123 1336 ntBASIC18.09■□□□□ 0.49
Col11a1Q61245 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC18.09■□□□□ 0.49
Col11a1Q61245 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.09■□□□□ 0.49
Col11a1Q61245 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col11a1Q61245 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Col11a1Q61245 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Col11a1Q61245 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col11a1Q61245 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col11a1Q61245 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col11a1Q61245 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col11a1Q61245 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Col11a1Q61245 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC18.08■□□□□ 0.48
Col11a1Q61245 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC18.08■□□□□ 0.48
Col11a1Q61245 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.08■□□□□ 0.48
Col11a1Q61245 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.08■□□□□ 0.48
Col11a1Q61245 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 AC158538.2-201ENSMUST00000225455 906 ntBASIC18.08■□□□□ 0.48
Col11a1Q61245 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Col11a1Q61245 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col11a1Q61245 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Col11a1Q61245 Arhgef33-209ENSMUST00000225223 714 ntBASIC18.07■□□□□ 0.48
Col11a1Q61245 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 AC140397.2-201ENSMUST00000224213 834 ntBASIC18.07■□□□□ 0.48
Col11a1Q61245 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col11a1Q61245 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.06■□□□□ 0.48
Col11a1Q61245 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Mir449b-201ENSMUST00000104833 80 ntBASIC18.06■□□□□ 0.48
Col11a1Q61245 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Gm6257-201ENSMUST00000163864 910 ntBASIC18.06■□□□□ 0.48
Col11a1Q61245 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Col11a1Q61245 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col11a1Q61245 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms