Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm27437-201ENSMUST00000183429 107 ntBASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Gm37277-201ENSMUST00000194052 1111 ntBASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Gm16499-203ENSMUST00000204633 2177 ntBASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Gm38294-201ENSMUST00000192831 381 ntBASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 AC158538.2-201ENSMUST00000225455 906 ntBASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col27a1Q5QNQ9 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Col27a1Q5QNQ9 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Gm13823-201ENSMUST00000119930 345 ntBASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col27a1Q5QNQ9 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col27a1Q5QNQ9 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
Col27a1Q5QNQ9 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Gm25287-201ENSMUST00000103846 110 ntBASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Gm22918-201ENSMUST00000103855 110 ntBASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Gm9385-201ENSMUST00000117563 472 ntBASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Col27a1Q5QNQ9 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Col27a1Q5QNQ9 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms