Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3aQ3ULJ3 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Gm6736-201ENSMUST00000166583 948 ntBASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Upf3aQ3ULJ3 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Gm2756-201ENSMUST00000195851 400 ntBASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Upf3aQ3ULJ3 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Gm4995-201ENSMUST00000117247 432 ntBASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Gm43575-201ENSMUST00000196420 516 ntBASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
Upf3aQ3ULJ3 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms