Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col28a1Q2UY11 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Gm27000-201ENSMUST00000182943 842 ntBASIC15.81■□□□□ 0.12
Col28a1Q2UY11 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Gm10517-202ENSMUST00000192970 758 ntBASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Gm37025-201ENSMUST00000195159 829 ntBASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col28a1Q2UY11 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col28a1Q2UY11 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Gm7889-201ENSMUST00000185591 958 ntBASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Gm37292-201ENSMUST00000192062 758 ntBASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col28a1Q2UY11 Prob1-201ENSMUST00000097619 3021 ntBASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Gm10459-201ENSMUST00000202708 1155 ntBASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Otx2os1-204ENSMUST00000227221 751 ntBASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Odf3b-204ENSMUST00000227834 930 ntBASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Gm7367-201ENSMUST00000057611 492 ntBASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col28a1Q2UY11 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col28a1Q2UY11 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms