Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
Shmt1P50431 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Shmt1P50431 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Shmt1P50431 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.15■□□□□ 0.34
Shmt1P50431 Gm15372-201ENSMUST00000120729 834 ntBASIC17.15■□□□□ 0.34
Shmt1P50431 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.15■□□□□ 0.34
Shmt1P50431 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.15■□□□□ 0.34
Shmt1P50431 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.15■□□□□ 0.34
Shmt1P50431 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shmt1P50431 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Shmt1P50431 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.15■□□□□ 0.34
Shmt1P50431 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
Shmt1P50431 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Shmt1P50431 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Shmt1P50431 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Haglr-201ENSMUST00000100000 2085 ntBASIC17.14■□□□□ 0.33
Shmt1P50431 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
Shmt1P50431 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.14■□□□□ 0.33
Shmt1P50431 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.14■□□□□ 0.33
Shmt1P50431 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.14■□□□□ 0.33
Shmt1P50431 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Shmt1P50431 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC17.14■□□□□ 0.33
Shmt1P50431 Gm44454-201ENSMUST00000198541 138 ntBASIC17.14■□□□□ 0.33
Shmt1P50431 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.14■□□□□ 0.33
Shmt1P50431 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.14■□□□□ 0.33
Shmt1P50431 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Shmt1P50431 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shmt1P50431 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Shmt1P50431 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Shmt1P50431 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.13■□□□□ 0.33
Shmt1P50431 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.13■□□□□ 0.33
Shmt1P50431 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.13■□□□□ 0.33
Shmt1P50431 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Shmt1P50431 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Shmt1P50431 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.13■□□□□ 0.33
Shmt1P50431 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Shmt1P50431 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Shmt1P50431 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Shmt1P50431 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shmt1P50431 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.12■□□□□ 0.33
Shmt1P50431 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.12■□□□□ 0.33
Shmt1P50431 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.12■□□□□ 0.33
Shmt1P50431 Birc2-201ENSMUST00000054878 378 ntBASIC17.12■□□□□ 0.33
Shmt1P50431 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms