Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Gm24589-201ENSMUST00000116692 94 ntBASIC12.62□□□□□ -0.39
Hoxd3P09027 Gm13312-201ENSMUST00000119631 718 ntBASIC12.62□□□□□ -0.39
Hoxd3P09027 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC12.62□□□□□ -0.39
Hoxd3P09027 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC12.62□□□□□ -0.39
Hoxd3P09027 Rprl3-201ENSMUST00000157400 290 ntBASIC12.62□□□□□ -0.39
Hoxd3P09027 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC12.62□□□□□ -0.39
Hoxd3P09027 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Hoxd3P09027 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Hoxd3P09027 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 AC153794.1-201ENSMUST00000169148 126 ntBASIC12.61□□□□□ -0.39
Hoxd3P09027 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Hoxd3P09027 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Hoxd3P09027 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Gm16401-202ENSMUST00000197463 2074 ntBASIC12.6□□□□□ -0.39
Hoxd3P09027 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Hoxd3P09027 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC12.6□□□□□ -0.39
Hoxd3P09027 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC12.6□□□□□ -0.39
Hoxd3P09027 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Hoxd3P09027 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Hoxd3P09027 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxd3P09027 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxd3P09027 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms