Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm2213-201ENSMUST00000197485 688 ntBASIC19.29■□□□□ 0.68
Col3a1P08121 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC19.29■□□□□ 0.68
Col3a1P08121 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC19.29■□□□□ 0.68
Col3a1P08121 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC19.29■□□□□ 0.68
Col3a1P08121 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col3a1P08121 Gm8344-201ENSMUST00000119813 856 ntBASIC19.28■□□□□ 0.68
Col3a1P08121 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC19.28■□□□□ 0.68
Col3a1P08121 Gm6257-201ENSMUST00000163864 910 ntBASIC19.28■□□□□ 0.68
Col3a1P08121 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC19.28■□□□□ 0.68
Col3a1P08121 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col3a1P08121 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
Col3a1P08121 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.28■□□□□ 0.68
Col3a1P08121 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.28■□□□□ 0.68
Col3a1P08121 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col3a1P08121 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 AC131586.3-201ENSMUST00000228355 1367 ntBASIC19.28■□□□□ 0.68
Col3a1P08121 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC19.28■□□□□ 0.68
Col3a1P08121 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC19.28■□□□□ 0.68
Col3a1P08121 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC19.28■□□□□ 0.68
Col3a1P08121 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC19.28■□□□□ 0.68
Col3a1P08121 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col3a1P08121 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Col3a1P08121 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Col3a1P08121 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col3a1P08121 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col3a1P08121 Gm9727-201ENSMUST00000161387 555 ntBASIC19.27■□□□□ 0.67
Col3a1P08121 AC093926.2-201ENSMUST00000214468 1228 ntBASIC19.27■□□□□ 0.67
Col3a1P08121 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col3a1P08121 AC159093.1-201ENSMUST00000227779 380 ntBASIC19.27■□□□□ 0.67
Col3a1P08121 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col3a1P08121 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col3a1P08121 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Col3a1P08121 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
Col3a1P08121 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col3a1P08121 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Col3a1P08121 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Col3a1P08121 Gm11594-201ENSMUST00000122313 162 ntBASIC19.26■□□□□ 0.67
Col3a1P08121 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC19.26■□□□□ 0.67
Col3a1P08121 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col3a1P08121 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC19.26■□□□□ 0.67
Col3a1P08121 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Col3a1P08121 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.25■□□□□ 0.67
Col3a1P08121 Gm15467-201ENSMUST00000120582 445 ntBASIC19.25■□□□□ 0.67
Col3a1P08121 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col3a1P08121 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC19.25■□□□□ 0.67
Col3a1P08121 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms