Protein–RNA interactions for Protein: P01849

Tcra, T-cell receptor alpha chain C region, mousemouse

Predictions only

Length 138 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TcraP01849 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
TcraP01849 Gm15039-201ENSMUST00000118914 875 ntBASIC11.91□□□□□ -0.5
TcraP01849 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
TcraP01849 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
TcraP01849 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
TcraP01849 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC11.91□□□□□ -0.5
TcraP01849 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC11.91□□□□□ -0.5
TcraP01849 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC11.91□□□□□ -0.5
TcraP01849 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
TcraP01849 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
TcraP01849 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
TcraP01849 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC11.9□□□□□ -0.5
TcraP01849 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Gm5408-201ENSMUST00000197998 747 ntBASIC11.9□□□□□ -0.5
TcraP01849 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
TcraP01849 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
TcraP01849 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
TcraP01849 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
TcraP01849 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC11.9□□□□□ -0.51
TcraP01849 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
TcraP01849 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.51
TcraP01849 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC11.89□□□□□ -0.51
TcraP01849 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
TcraP01849 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
TcraP01849 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC11.89□□□□□ -0.51
TcraP01849 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
TcraP01849 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC11.89□□□□□ -0.51
TcraP01849 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
TcraP01849 Flg-201ENSMUST00000050758 1488 ntBASIC11.89□□□□□ -0.51
TcraP01849 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
TcraP01849 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
TcraP01849 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
TcraP01849 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
TcraP01849 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
TcraP01849 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
TcraP01849 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms