Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AL445567.2-201ENST00000618935 498 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 uc_338.22-201ENST00000622722 187 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 Z99571.1-201ENST00000636677 394 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 AC007823.1-201ENST00000569932 1566 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 MTND5P19-201ENST00000424872 1794 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
USP53Q70EK8 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.34□□□□□ -1.72
USP53Q70EK8 AC010733.2-201ENST00000589496 5702 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 AC018529.3-201ENST00000624212 2254 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 KPNA2P1-201ENST00000458289 1591 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 RNU6-1167P-201ENST00000363227 94 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 RNU6-1160P-201ENST00000384546 104 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 RNU6-310P-201ENST00000384655 107 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.33□□□□□ -1.72
USP53Q70EK8 RPL31P12-201ENST00000422587 358 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 AC091390.3-201ENST00000426478 338 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP53Q70EK8 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.33□□□□□ -1.72
USP53Q70EK8 RPS24P13-201ENST00000442520 397 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.33□□□□□ -1.72
USP53Q70EK8 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.33□□□□□ -1.72
USP53Q70EK8 AC012671.1-201ENST00000451912 203 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 RNU7-138P-201ENST00000459479 64 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 UQCRHP4-201ENST00000471686 272 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 RPS20P22-201ENST00000473700 357 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.33□□□□□ -1.72
USP53Q70EK8 IGKV2D-23-201ENST00000518179 286 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.33□□□□□ -1.72
USP53Q70EK8 AC087369.1-201ENST00000520775 996 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 AC026371.1-201ENST00000551867 419 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 MIR4429-201ENST00000580105 73 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 LRRC37A5P-203ENST00000580181 585 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 AP001836.1-201ENST00000604675 523 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.33□□□□□ -1.72
USP53Q70EK8 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.33□□□□□ -1.72
USP53Q70EK8 AL669831.3-213ENST00000636676 183 ntBASIC4.33□□□□□ -1.72
USP53Q70EK8 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.33□□□□□ -1.72
USP53Q70EK8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP53Q70EK8 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
USP53Q70EK8 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USP53Q70EK8 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.33□□□□□ -1.72
USP53Q70EK8 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP53Q70EK8 SCN1A-220ENST00000641603 12506 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USP53Q70EK8 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USP53Q70EK8 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.32□□□□□ -1.72
USP53Q70EK8 SNORD3E-201ENST00000362899 217 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RNU6-512P-201ENST00000364438 103 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RNU6-214P-201ENST00000384130 107 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RNU6-95P-201ENST00000384697 107 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RNA5SP146-201ENST00000410743 123 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RNU6-607P-201ENST00000411283 108 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RPL23AP26-201ENST00000412728 464 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.32□□□□□ -1.72
USP53Q70EK8 NDUFB4P7-201ENST00000423198 363 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AL137792.2-201ENST00000443484 235 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 snoU13.4-201ENST00000458916 104 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.32□□□□□ -1.72
USP53Q70EK8 MTND3P25-201ENST00000509243 135 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 AC021146.3-201ENST00000511911 260 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 RNU6-1315P-201ENST00000517187 99 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AC025423.5-201ENST00000550230 219 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AL161798.1-201ENST00000604630 131 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.32□□□□□ -1.72
USP53Q70EK8 AL512643.1-201ENST00000635735 524 ntBASIC4.32□□□□□ -1.72
USP53Q70EK8 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.31□□□□□ -1.72
USP53Q70EK8 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
USP53Q70EK8 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 OR5P1P-201ENST00000299512 925 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 MIR331-201ENST00000362302 94 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 Y_RNA.112-201ENST00000363250 102 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 SNORA7.2-201ENST00000364446 145 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USP53Q70EK8 Y_RNA.646-201ENST00000410980 101 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 Z85995.1-201ENST00000415547 335 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 PMCHL1-202ENST00000423102 261 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.31□□□□□ -1.72
USP53Q70EK8 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 AL359273.1-201ENST00000510918 627 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 AC008716.1-201ENST00000511084 513 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.31□□□□□ -1.72
USP53Q70EK8 SMURF2P1-201ENST00000514992 481 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms