Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL360085.1-201ENST00000604713 532 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.58□□□□□ -2.16
CCDC88BA6NC98 AC110079.1-202ENST00000635213 138 ntBASIC1.58□□□□□ -2.16
CCDC88BA6NC98 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.58□□□□□ -2.16
CCDC88BA6NC98 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC88BA6NC98 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 AL583843.1-201ENST00000456070 346 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 SNORD97-201ENST00000459187 142 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 RNU6-1132P-201ENST00000459214 107 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 AL627230.6-201ENST00000611129 280 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 HMGB1P24-202ENST00000615653 685 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC88BA6NC98 AC096656.1-201ENST00000623826 1364 ntBASIC1.57□□□□□ -2.16
CCDC88BA6NC98 Y_RNA.30-201ENST00000362572 97 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC88BA6NC98 AL445305.1-201ENST00000432577 575 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 HMGN2P10-201ENST00000448085 265 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 AC021382.1-201ENST00000483523 359 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 AC108120.2-201ENST00000512973 294 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 MIR3117-201ENST00000584034 78 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 AC004908.2-201ENST00000609090 574 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC88BA6NC98 SNORA51.12-201ENST00000384448 134 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 CIR1P3-201ENST00000405137 479 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 CYCSP48-201ENST00000417124 323 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 AC005534.2-201ENST00000431047 433 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 SNORA31.18-201ENST00000517043 134 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 CR383656.8-201ENST00000549046 145 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 IMMP1LP2-201ENST00000552954 492 ntBASIC1.56□□□□□ -2.16
CCDC88BA6NC98 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC88BA6NC98 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AC018630.2-201ENST00000534866 2403 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 SNORA3A-201ENST00000364113 130 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 RNU6-1105P-201ENST00000384774 107 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 ARL2BPP3-201ENST00000421226 480 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 PMCHL2-203ENST00000457791 237 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AC096751.1-202ENST00000502691 1067 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 RN7SKP179-201ENST00000516126 217 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 COX6CP3-201ENST00000580869 223 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AL161423.1-201ENST00000613700 262 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AP001486.3-201ENST00000615334 372 ntBASIC1.55□□□□□ -2.16
CCDC88BA6NC98 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CCDC88BA6NC98 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 RNU4-42P-201ENST00000364738 142 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 HMGN1P33-201ENST00000432945 451 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 CABYRP1-201ENST00000465493 1045 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 RPL30P14-201ENST00000482744 348 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC114801.2-201ENST00000503825 781 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC008676.3-201ENST00000521237 435 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC087272.1-201ENST00000523624 533 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC079148.1-201ENST00000565944 819 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 AC113194.1-201ENST00000606037 500 ntBASIC1.54□□□□□ -2.16
CCDC88BA6NC98 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC88BA6NC98 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC88BA6NC98 RNY1P4-201ENST00000384595 115 ntBASIC1.53□□□□□ -2.16
CCDC88BA6NC98 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.53□□□□□ -2.16
CCDC88BA6NC98 AC004941.2-201ENST00000427009 228 ntBASIC1.53□□□□□ -2.16
CCDC88BA6NC98 UBE2V1P6-201ENST00000430840 422 ntBASIC1.53□□□□□ -2.16
CCDC88BA6NC98 RPS29P28-201ENST00000446439 141 ntBASIC1.53□□□□□ -2.16
CCDC88BA6NC98 SETP11-201ENST00000473027 690 ntBASIC1.53□□□□□ -2.16
CCDC88BA6NC98 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC88BA6NC98 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.53□□□□□ -2.16
CCDC88BA6NC98 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC88BA6NC98 SNORA16B-201ENST00000364674 135 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
CCDC88BA6NC98 RNA5SP252-201ENST00000391131 119 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 TRIM60P3Y-201ENST00000432201 673 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 THAP5P1-201ENST00000439089 262 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 AC004022.1-201ENST00000447766 1066 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 AL500527.1-201ENST00000448532 255 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 AC087854.1-201ENST00000519706 414 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88BA6NC98 AL020996.3-201ENST00000606617 222 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC88BA6NC98 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.52□□□□□ -2.17
CCDC88BA6NC98 Y_RNA.178-201ENST00000363832 102 ntBASIC1.51□□□□□ -2.17
CCDC88BA6NC98 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC88BA6NC98 AC022447.3-201ENST00000506865 495 ntBASIC1.51□□□□□ -2.17
CCDC88BA6NC98 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC88BA6NC98 AC011472.4-201ENST00000615848 491 ntBASIC1.51□□□□□ -2.17
CCDC88BA6NC98 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC88BA6NC98 AC109809.1-201ENST00000619665 545 ntBASIC1.51□□□□□ -2.17
CCDC88BA6NC98 AC068880.5-201ENST00000624331 290 ntBASIC1.51□□□□□ -2.17
CCDC88BA6NC98 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms