Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 ANKRD36BP1-202ENST00000604892 1417 ntBASIC5.39□□□□□ -1.55
CCDC9Q9Y3X0 AL359693.1-201ENST00000614959 2407 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC004972.1-201ENST00000623934 2209 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-1090P-201ENST00000364065 94 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 Y_RNA.453-201ENST00000384223 109 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 MIR1179-201ENST00000408703 91 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 SNORA3.3-201ENST00000408712 125 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 RPL7P46-201ENST00000425129 740 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 HMGN2P20-201ENST00000437531 273 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC104058.1-201ENST00000448028 297 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 CACYBPP2-201ENST00000453625 678 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 U3.44-201ENST00000458938 192 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 RPS26P28-201ENST00000470806 348 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC092436.1-201ENST00000506450 503 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 RNA5SP179-201ENST00000517284 121 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AC006504.3-201ENST00000586818 523 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 AL353746.1-201ENST00000566293 6881 ntBASIC5.38□□□□□ -1.55
CCDC9Q9Y3X0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 CKAP2P1-201ENST00000555477 2049 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RNA5SP97-201ENST00000365006 84 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-217P-201ENST00000384164 104 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-1035P-201ENST00000384477 107 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 Y_RNA.534-201ENST00000384599 112 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-550P-201ENST00000391057 101 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RN7SKP167-201ENST00000411047 285 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AL591704.1-201ENST00000432574 275 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AL159987.2-201ENST00000432754 307 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RPS24P13-201ENST00000442520 397 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC073415.1-201ENST00000449240 153 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RPL29P14-201ENST00000495837 428 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 EIF4EP3-201ENST00000498782 656 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC109927.2-201ENST00000506416 303 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 RN7SKP219-201ENST00000516825 296 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 HSPE1P7-201ENST00000604681 321 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC091167.4-201ENST00000605079 184 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC004805.2-201ENST00000605382 482 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AC073308.1-201ENST00000623696 305 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 MIR3651-201ENST00000630427 90 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 MIR3688-2-201ENST00000636963 87 ntBASIC5.37□□□□□ -1.55
CCDC9Q9Y3X0 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 SNORD35B-201ENST00000363660 87 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 SNORA48.2-201ENST00000390926 124 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 UBE2V1P2-201ENST00000397758 440 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 RNU2-68P-201ENST00000410878 191 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AL161631.1-201ENST00000417933 486 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AL160275.3-201ENST00000423876 471 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 ATP5JP1-201ENST00000431631 322 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 SNRPEP9-201ENST00000436794 238 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 SNRPFP3-201ENST00000457792 225 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 MTAPP1-201ENST00000489154 819 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 RNA5SP165-201ENST00000517142 115 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 MTND1P35-201ENST00000526739 508 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AL121576.1-201ENST00000556055 276 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC010201.1-201ENST00000605051 540 ntBASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms