Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RN7SL594P-201ENST00000470590 287 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC233702.1-201ENST00000482905 502 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC078817.1-201ENST00000492623 435 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 MTCYBP18-201ENST00000501056 747 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 Y_RNA.702-201ENST00000516843 96 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 RN7SKP60-201ENST00000516985 239 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC015917.1-201ENST00000579654 510 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC174048.1-201ENST00000603389 144 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 RMST_8.1-201ENST00000610287 165 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC007998.5-201ENST00000622938 237 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 C2orf27A-204ENST00000623058 969 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC024614.3-201ENST00000637860 256 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC058791.1-201ENST00000608412 3198 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AL157700.1-201ENST00000561973 1432 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 Y_RNA.157-201ENST00000363638 102 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 SNORA62.1-201ENST00000364287 154 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RN7SKP53-201ENST00000411337 315 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 OR9R1P-201ENST00000412200 877 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RPL30P16-201ENST00000419341 429 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RPL26P6-201ENST00000440913 438 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 NUTF2P7-201ENST00000453086 375 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC004801.2-202ENST00000463559 283 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RPL23AP55-201ENST00000498163 452 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RPL38P4-201ENST00000502376 214 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC018710.1-201ENST00000506509 158 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 OR5AL2P-201ENST00000532185 920 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 BDH2P1-201ENST00000602288 736 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 BNIP3P10-201ENST00000605360 577 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC004696.1-201ENST00000614345 607 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AL357559.1-201ENST00000622228 274 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC025034.2-201ENST00000623264 286 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AP003355.3-201ENST00000623465 114 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AL021368.2-201ENST00000606125 5352 ntBASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMCH1Q9UPQ0 AC116096.1-201ENST00000566804 2314 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AP001350.1-201ENST00000601906 1524 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 RPL7P26-201ENST00000333817 754 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 DEFB108F-201ENST00000344638 222 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 RNU6-188P-201ENST00000364207 107 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 RNA5SP51-201ENST00000364750 119 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 NDUFS5P1-201ENST00000405668 289 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC017079.2-201ENST00000416102 485 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 RPL21P111-201ENST00000418453 477 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC012498.1-201ENST00000424037 437 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC008850.1-201ENST00000427546 362 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 CALM2P2-201ENST00000428512 440 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 MTND4P25-201ENST00000441039 533 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AL357552.1-201ENST00000445254 415 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 RPL7L1P8-201ENST00000469911 741 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC068587.1-201ENST00000483613 781 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 UBE2CP3-201ENST00000502715 450 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC023141.12-201ENST00000512399 199 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC025465.4-201ENST00000513422 638 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 RNA5SP503-201ENST00000517047 117 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC024619.4-201ENST00000580924 316 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AC068831.8-201ENST00000620171 435 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms