Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 SAGE2P-201ENST00000420011 2126 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 OR56A5-201ENST00000340110 738 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 RNA5SP307-201ENST00000362863 116 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 RNU6-179P-201ENST00000363350 107 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.462-201ENST00000384268 102 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 U3.20-201ENST00000390909 217 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 MRPS18CP6-201ENST00000423587 223 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 FTH1P1-201ENST00000437933 532 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 RN7SKP92-201ENST00000517266 244 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 IGKV2D-23-201ENST00000518179 286 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 HSPE1P20-201ENST00000538133 289 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 SETP7-201ENST00000552169 453 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 MIR3133-201ENST00000583157 78 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 MIR6780A-201ENST00000615089 68 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 AC132825.6-201ENST00000638861 357 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 AL356489.2-201ENST00000566968 3528 ntBASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC39Q9UFE4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 SNORD115-7-201ENST00000365306 82 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 SNORD14.1-201ENST00000365609 90 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 RNU6-662P-201ENST00000384253 104 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.478-201ENST00000384358 107 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 MIR659-201ENST00000384963 97 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 RNA5SP219-201ENST00000390940 113 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AL590632.1-201ENST00000424289 371 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 USMG5P1-201ENST00000425964 177 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AL132765.1-201ENST00000434165 553 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 HIGD1AP11-201ENST00000438361 280 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC108734.1-201ENST00000439549 399 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AL359672.1-201ENST00000442302 409 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 RNA5SP384-201ENST00000516615 116 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 HSPE1P14-201ENST00000605812 302 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 SDR42E1P2-201ENST00000614861 481 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AP005019.3-201ENST00000620418 560 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 SDR42E1P4-201ENST00000620894 481 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC007546.2-201ENST00000623996 360 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 AL592437.2-201ENST00000421655 2434 ntBASIC5.02□□□□□ -1.61
CCDC39Q9UFE4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 ZNF962P-201ENST00000443465 3140 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 MTND5P6-201ENST00000422338 1798 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AL359854.1-201ENST00000614203 1594 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.26-201ENST00000362539 101 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.214-201ENST00000364201 112 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.270-201ENST00000364693 104 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.276-201ENST00000364732 109 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 SNORD113-1-201ENST00000365321 69 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AC073264.2-201ENST00000448886 166 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 PCMTD1P1-201ENST00000455560 355 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 RN7SL354P-201ENST00000469282 294 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms